Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AL475_RS13785 Genome accession   NZ_CP014033
Coordinates   1231151..1231801 (+) Length   216 a.a.
NCBI ID   WP_104966214.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226151..1236801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS13770 (AL475_05810) - 1226751..1228199 (-) 1449 WP_104966213.1 MSHA biogenesis protein MshI -
  AL475_RS13775 (AL475_05815) csrD 1228207..1230201 (-) 1995 WP_044364106.1 RNase E specificity factor CsrD -
  AL475_RS13780 (AL475_05820) ssb 1230337..1230867 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  AL475_RS13785 (AL475_05825) qstR 1231151..1231801 (+) 651 WP_104966214.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL475_RS13790 (AL475_05830) galU 1231929..1232798 (+) 870 WP_104966215.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL475_RS13795 (AL475_05835) uvrA 1232936..1235758 (+) 2823 WP_044364108.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24825.57 Da        Isoelectric Point: 9.2330

>NTDB_id=167648 AL475_RS13785 WP_104966214.1 1231151..1231801(+) (qstR) [Vibrio fluvialis strain FDAARGOS_100]
MQRANYARTIYYLCLDQTASAPSVLQSALDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQSSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=167648 AL475_RS13785 WP_104966214.1 1231151..1231801(+) (qstR) [Vibrio fluvialis strain FDAARGOS_100]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGTCTGTCCTGCAATC
AGCTTTAGACCTACTGGCAATTCCGGTTCCCCAAATAGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGTCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTCGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGTTTGTTCTA
CCAATCCAGCGAGCCTGAACAGATTGCGCGCGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGGGAG
TTACAGATTTTGCGCAGTCTAAAAACGGGGGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTACCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACTCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.233

99.537

0.699
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment