Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BFO62_RS02740 Genome accession   NZ_CP017257
Coordinates   477278..477559 (+) Length   93 a.a.
NCBI ID   WP_002234641.1    Uniprot ID   -
Organism   Neisseria meningitidis strain COL-201504-11     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 472278..482559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS02700 (BFO62_02465) - 472895..473167 (+) 273 WP_002214440.1 hypothetical protein -
  BFO62_RS14285 - 473248..473550 (+) 303 Protein_451 VENN motif pre-toxin domain-containing protein -
  BFO62_RS13490 (BFO62_02470) - 473719..474339 (+) 621 WP_002244464.1 hypothetical protein -
  BFO62_RS02710 (BFO62_02475) - 474342..475277 (+) 936 WP_002221423.1 immunity 49 family protein -
  BFO62_RS12840 (BFO62_02485) - 475841..476044 (+) 204 WP_002261355.1 hypothetical protein -
  BFO62_RS02730 (BFO62_02495) - 476608..477066 (+) 459 WP_002221421.1 hypothetical protein -
  BFO62_RS12845 - 477065..477199 (+) 135 Protein_456 IS1595 family transposase -
  BFO62_RS02740 (BFO62_02500) comA 477278..477559 (+) 282 WP_002234641.1 ATP-binding cassette domain-containing protein Regulator
  BFO62_RS02745 (BFO62_02505) - 477580..478806 (-) 1227 WP_002221418.1 YihY family inner membrane protein -
  BFO62_RS14290 - 478961..479147 (+) 187 Protein_459 NAD(P)H-quinone oxidoreductase -
  BFO62_RS02755 (BFO62_02515) queC 479351..480010 (+) 660 WP_002217873.1 7-cyano-7-deazaguanine synthase QueC -
  BFO62_RS02760 (BFO62_02520) - 480038..480553 (+) 516 WP_002217871.1 DUF1543 domain-containing protein -
  BFO62_RS02765 (BFO62_02525) queD 480560..480982 (+) 423 WP_002217869.1 6-carboxytetrahydropterin synthase QueD -
  BFO62_RS02770 (BFO62_02530) - 481251..481622 (+) 372 WP_002217868.1 DUF1304 domain-containing protein -
  BFO62_RS02775 (BFO62_02535) - 481619..482257 (+) 639 WP_002219714.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10086.79 Da        Isoelectric Point: 6.7077

>NTDB_id=167469 BFO62_RS02740 WP_002234641.1 477278..477559(+) (comA) [Neisseria meningitidis strain COL-201504-11]
MIHEEICAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=167469 BFO62_RS02740 WP_002234641.1 477278..477559(+) (comA) [Neisseria meningitidis strain COL-201504-11]
ATGATTCACGAAGAAATCTGCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGCAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(15-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

45.977

93.548

0.43
  comA Streptococcus pneumoniae TIGR4

43.956

97.849

0.43
  comA Streptococcus pneumoniae Rx1

43.956

97.849

0.43
  comA Streptococcus pneumoniae D39

43.956

97.849

0.43
  comA Streptococcus pneumoniae R6

43.956

97.849

0.43
  comA Streptococcus mitis NCTC 12261

43.956

97.849

0.43
  comA Streptococcus gordonii str. Challis substr. CH1

42.857

97.849

0.419