Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL507_RS13550 Genome accession   NZ_CP014024
Coordinates   2831966..2833492 (+) Length   508 a.a.
NCBI ID   WP_061064481.1    Uniprot ID   -
Organism   Providencia stuartii strain FDAARGOS_145     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2826966..2838492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL507_RS13530 (AL507_13335) - 2828400..2829326 (-) 927 WP_004915437.1 branched-chain amino acid transaminase -
  AL507_RS13535 (AL507_13340) ilvM 2829339..2829608 (-) 270 WP_004915433.1 acetolactate synthase 2 small subunit -
  AL507_RS13540 (AL507_13345) ilvG 2829605..2831251 (-) 1647 WP_061064480.1 acetolactate synthase 2 catalytic subunit -
  AL507_RS13545 (AL507_20335) ilvL 2831385..2831486 (-) 102 WP_071599630.1 ilv operon leader peptide -
  AL507_RS13550 (AL507_13350) comM 2831966..2833492 (+) 1527 WP_061064481.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL507_RS13555 (AL507_13355) - 2833677..2834015 (-) 339 WP_004915426.1 DUF413 domain-containing protein -
  AL507_RS13560 (AL507_13360) hdfR 2834127..2834972 (+) 846 WP_004915423.1 HTH-type transcriptional regulator HdfR -
  AL507_RS13565 (AL507_13365) - 2835309..2836103 (+) 795 Protein_2643 transposase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55570.35 Da        Isoelectric Point: 8.6502

>NTDB_id=167433 AL507_RS13550 WP_061064481.1 2831966..2833492(+) (comM) [Providencia stuartii strain FDAARGOS_145]
MALAIVYTRASIGMNAPLVTVEAHISNGLPGLTLVGLPETAVKESRDRVRSALLNSGFEFPAKKMTINLAPADLPKEGGR
YDLAIAIAILASSGQVPTKILHQYEFLGELALSGHIRHVNGAIPAALAALTQKRQLVLSSENQYELNLLPDNSVKFAGTL
LELCHFLYEKMTLSGNFHPTEIPEPPICDGNISDIIGQEQGKRALEICASGGHNLLLLGPPGTGKTMLASRLKTLLPSLT
PQEALEVASIHSLCHSSDLTSPWPPRPFRAPHHSASMAALIGGGSLPKPGEISLAHNGILFLDELPEFSRSVLDALREPL
ESRQVIISRAKAKVCFPANFQLIAALNPSPTGQYQGDYCRSSSTKILRYLSRVSGPFLDRFDLSIEIPLLPLGTLSHQQY
QSENSEQIRARVILAREIQMKRMGKLNSQLTARETTNLCQLTCKDSLFLEHALNKLGLSIRAWHRILRVARTIADLQNTN
NIEKPHLLEALGYRAMDKLLLHLQKQVS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=167433 AL507_RS13550 WP_061064481.1 2831966..2833492(+) (comM) [Providencia stuartii strain FDAARGOS_145]
ATGGCATTAGCAATTGTGTATACAAGAGCATCGATAGGAATGAATGCGCCACTGGTTACTGTTGAAGCACATATTAGTAA
TGGGCTACCTGGATTGACACTTGTAGGTTTACCTGAAACGGCTGTAAAAGAATCGAGAGATAGAGTACGGAGCGCATTAT
TAAACAGCGGTTTTGAATTCCCTGCAAAAAAAATGACGATTAACTTAGCCCCTGCCGATCTCCCGAAAGAAGGGGGACGT
TACGATCTTGCGATAGCAATCGCTATCTTAGCGTCATCAGGCCAAGTGCCTACAAAAATACTTCATCAGTATGAATTTCT
CGGTGAACTCGCTTTGTCTGGTCATATTCGCCATGTAAATGGTGCTATCCCTGCCGCACTCGCGGCATTAACACAAAAAA
GGCAACTCGTTCTTTCATCTGAAAATCAATATGAGCTGAATTTATTACCTGATAATAGTGTTAAGTTTGCAGGAACATTA
TTAGAACTTTGTCATTTTTTATACGAGAAAATGACATTATCAGGTAATTTCCATCCGACCGAAATCCCTGAGCCCCCCAT
TTGCGACGGGAATATTAGCGATATTATTGGCCAAGAGCAGGGAAAAAGAGCGTTAGAGATCTGTGCAAGTGGTGGGCACA
ACTTATTGTTATTAGGCCCTCCTGGCACAGGAAAAACGATGCTAGCAAGTCGCCTAAAAACATTACTACCGTCCCTAACG
CCACAGGAAGCCCTAGAAGTCGCCTCTATACATAGCCTATGCCATTCAAGCGATTTAACTTCTCCTTGGCCTCCTAGACC
CTTTAGAGCTCCTCACCATAGCGCGTCAATGGCAGCACTCATTGGTGGAGGGAGCCTTCCTAAACCCGGTGAAATATCAT
TAGCCCATAATGGCATTTTATTTCTGGATGAATTGCCTGAGTTTAGCCGCTCTGTACTTGACGCATTACGTGAGCCACTT
GAATCAAGGCAAGTTATTATTTCCCGCGCTAAAGCAAAAGTGTGTTTCCCAGCCAACTTTCAACTCATCGCCGCACTGAA
CCCAAGCCCTACAGGCCAATATCAAGGTGATTACTGCCGAAGCTCCTCCACGAAAATCTTACGCTACTTATCACGCGTTT
CAGGTCCTTTTCTTGATCGATTTGATCTGTCTATTGAAATACCGCTGCTTCCGTTGGGTACACTCAGTCATCAACAGTAT
CAAAGCGAAAATAGTGAGCAAATCCGCGCTAGAGTCATACTTGCAAGAGAGATACAAATGAAAAGAATGGGGAAACTCAA
TAGCCAATTAACCGCCAGAGAAACGACAAACCTATGCCAACTTACATGCAAAGATTCACTTTTTTTGGAGCATGCCTTAA
ACAAACTTGGGTTATCGATACGCGCTTGGCATCGCATTTTAAGAGTCGCTCGAACTATTGCCGACTTACAAAATACCAAT
AATATCGAAAAACCTCATCTTCTCGAAGCTCTCGGTTATAGAGCGATGGATAAGTTATTGCTTCATTTGCAAAAACAAGT
AAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.672

99.606

0.604
  comM Glaesserella parasuis strain SC1401

60.314

100

0.604
  comM Haemophilus influenzae Rd KW20

59.883

100

0.602
  comM Vibrio campbellii strain DS40M4

59.055

100

0.591
  comM Legionella pneumophila str. Paris

47.904

98.622

0.472
  comM Legionella pneumophila strain ERS1305867

47.904

98.622

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.902

100

0.451

Multiple sequence alignment