Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   AL533_RS16550 Genome accession   NZ_CP014019
Coordinates   3447695..3448825 (+) Length   376 a.a.
NCBI ID   WP_104919267.1    Uniprot ID   A0A2L1VMQ9
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3442695..3453825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS16525 (AL533_16525) - 3442965..3443171 (-) 207 WP_104919147.1 hypothetical protein -
  AL533_RS16530 (AL533_16530) - 3443215..3445329 (-) 2115 WP_104919148.1 TonB-dependent copper receptor -
  AL533_RS16535 (AL533_16535) - 3445402..3445830 (-) 429 WP_000231981.1 DUF2946 family protein -
  AL533_RS16540 (AL533_16540) def 3445867..3446397 (-) 531 WP_001196539.1 peptide deformylase -
  AL533_RS16545 (AL533_16545) tsaP 3446520..3447674 (+) 1155 WP_104919149.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AL533_RS16550 (AL533_16550) dprA 3447695..3448825 (+) 1131 WP_104919267.1 DNA-processing protein DprA Machinery gene
  AL533_RS16555 (AL533_16555) - 3448876..3449445 (+) 570 WP_032012041.1 L-threonylcarbamoyladenylate synthase -
  AL533_RS16560 (AL533_16560) - 3449837..3450757 (-) 921 WP_079377500.1 DMT family transporter -
  AL533_RS16565 (AL533_16565) - 3450863..3451516 (-) 654 WP_083009397.1 TetR/AcrR family transcriptional regulator -
  AL533_RS16570 (AL533_16570) - 3451651..3452865 (+) 1215 WP_031956073.1 MFS transporter -
  AL533_RS16575 (AL533_16575) - 3452887..3453651 (+) 765 WP_004711041.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 42036.57 Da        Isoelectric Point: 6.4539

>NTDB_id=167318 AL533_RS16550 WP_104919267.1 3447695..3448825(+) (dprA) [Acinetobacter nosocomialis strain FDAARGOS_129]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWFSLGLHANHLKRVNEFQTPQGQTQFEQLVQQV
CQYTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEETNTYTSEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVSVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=167318 AL533_RS16550 WP_104919267.1 3447695..3448825(+) (dprA) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTTCTCTCTGGGGCTAC
ATGCTAATCACTTAAAACGTGTAAACGAATTTCAAACGCCCCAAGGTCAAACGCAGTTTGAACAACTTGTACAACAAGTT
TGTCAGTATACGGATTTTATTTTAACGCCGGATGACTCAGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGAAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTTGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAACTAATACGTATACTTCAGAAATTCCT
GAGCATTTGATTGATCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTTTC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2L1VMQ9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

97.074

100

0.971

  dprA Acinetobacter baumannii D1279779

96.277

100

0.963

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378


Multiple sequence alignment