Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   AL533_RS16545 Genome accession   NZ_CP014019
Coordinates   3446520..3447674 (+) Length   384 a.a.
NCBI ID   WP_104919149.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3441520..3452674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS16520 (AL533_16520) - 3441682..3442896 (+) 1215 WP_083009394.1 oxygenase MpaB family protein -
  AL533_RS16525 (AL533_16525) - 3442965..3443171 (-) 207 WP_104919147.1 hypothetical protein -
  AL533_RS16530 (AL533_16530) - 3443215..3445329 (-) 2115 WP_104919148.1 TonB-dependent copper receptor -
  AL533_RS16535 (AL533_16535) - 3445402..3445830 (-) 429 WP_000231981.1 DUF2946 family protein -
  AL533_RS16540 (AL533_16540) def 3445867..3446397 (-) 531 WP_001196539.1 peptide deformylase -
  AL533_RS16545 (AL533_16545) tsaP 3446520..3447674 (+) 1155 WP_104919149.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AL533_RS16550 (AL533_16550) dprA 3447695..3448825 (+) 1131 WP_104919267.1 DNA-processing protein DprA Machinery gene
  AL533_RS16555 (AL533_16555) - 3448876..3449445 (+) 570 WP_032012041.1 L-threonylcarbamoyladenylate synthase -
  AL533_RS16560 (AL533_16560) - 3449837..3450757 (-) 921 WP_079377500.1 DMT family transporter -
  AL533_RS16565 (AL533_16565) - 3450863..3451516 (-) 654 WP_083009397.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42317.20 Da        Isoelectric Point: 8.2524

>NTDB_id=167317 AL533_RS16545 WP_104919149.1 3446520..3447674(+) (tsaP) [Acinetobacter nosocomialis strain FDAARGOS_129]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYVVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIHDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=167317 AL533_RS16545 WP_104919149.1 3446520..3447674(+) (tsaP) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCCTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTGAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGTGACGGCTGTGTAGGCATTATTCGTCGTTATACAGGTCAAACCACAAACC
TGCAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATGTTGTTGGTACCGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCATTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCACGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.958

100

0.99


Multiple sequence alignment