Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL486_RS06295 Genome accession   NZ_CP014018
Coordinates   1388129..1388635 (+) Length   168 a.a.
NCBI ID   WP_048628624.1    Uniprot ID   A0A0G4JG45
Organism   Pandoraea apista strain FDAARGOS_126     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1383129..1393635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL486_RS06285 (AL486_06285) uvrA 1383588..1386452 (-) 2865 WP_042114361.1 excinuclease ABC subunit UvrA -
  AL486_RS06290 (AL486_06290) - 1386935..1388098 (+) 1164 WP_094067884.1 MFS transporter -
  AL486_RS06295 (AL486_06295) ssb 1388129..1388635 (+) 507 WP_048628624.1 single-stranded DNA-binding protein Machinery gene
  AL486_RS06300 (AL486_06300) - 1388770..1389501 (+) 732 WP_104927001.1 HD domain-containing protein -
  AL486_RS06305 (AL486_06305) - 1389605..1390771 (+) 1167 WP_104927002.1 M20 aminoacylase family protein -
  AL486_RS06310 (AL486_06310) - 1390793..1391530 (-) 738 WP_048628626.1 FCD domain-containing protein -
  AL486_RS06315 (AL486_06315) - 1391819..1393273 (+) 1455 WP_104927003.1 2-hydroxymuconic semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17655.36 Da        Isoelectric Point: 5.3177

>NTDB_id=167279 AL486_RS06295 WP_048628624.1 1388129..1388635(+) (ssb) [Pandoraea apista strain FDAARGOS_126]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTDRYSTEIVADQMQMLGGRGGEGGGGGGGGYSRGGGGGDEGGGGGGYSRGGGAGRQQAPAKQSGGGFD
DMDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=167279 AL486_RS06295 WP_048628624.1 1388129..1388635(+) (ssb) [Pandoraea apista strain FDAARGOS_126]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGTAACCTTGGCGCCGACCCCGAAGTCCGCTATTTGCCAAGCGGCGATGC
GGTCGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAATCCGGCGAGTTCAAGGAAATGACGGAATGGC
ACCGCGTGTCGTTCTTCGGCCGTCTCGCCGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGC
CGTATCCGCACGCGCAAGTATCAGGCGCAGGACGGCACGGACCGTTACAGCACGGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGCGGCCGTGGCGGTGAAGGTGGCGGCGGCGGTGGCGGTGGCTACTCGCGCGGCGGCGGTGGTGGTGACGAAGGCG
GCGGCGGTGGCGGCTATTCGCGAGGCGGTGGCGCTGGCCGCCAGCAAGCGCCGGCCAAGCAATCGGGCGGCGGCTTCGAC
GACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G4JG45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.247

100

0.554
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.524
  ssb Neisseria gonorrhoeae MS11

43.956

100

0.476
  ssb Neisseria meningitidis MC58

43.956

100

0.476
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.955

100

0.381

Multiple sequence alignment