Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL486_RS05705 Genome accession   NZ_CP014018
Coordinates   1266804..1268357 (-) Length   517 a.a.
NCBI ID   WP_104926975.1    Uniprot ID   -
Organism   Pandoraea apista strain FDAARGOS_126     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1261804..1273357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL486_RS05685 (AL486_05685) - 1263221..1264573 (+) 1353 WP_042117781.1 sigma-54 dependent transcriptional regulator -
  AL486_RS05690 (AL486_05690) - 1264838..1265362 (-) 525 WP_042114234.1 TlpA disulfide reductase family protein -
  AL486_RS24270 - 1265419..1266039 (-) 621 WP_244914614.1 thioredoxin -
  AL486_RS05700 (AL486_05700) - 1266259..1266798 (+) 540 WP_042114235.1 hypothetical protein -
  AL486_RS05705 (AL486_05705) comM 1266804..1268357 (-) 1554 WP_104926975.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL486_RS05710 (AL486_05710) - 1268651..1268899 (-) 249 WP_042114239.1 accessory factor UbiK family protein -
  AL486_RS05715 (AL486_05715) - 1269295..1270143 (+) 849 WP_042114241.1 TorF family putative porin -
  AL486_RS05720 (AL486_05720) - 1270157..1270495 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  AL486_RS05725 (AL486_05725) amt 1270521..1272059 (+) 1539 WP_042114242.1 ammonium transporter -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54277.00 Da        Isoelectric Point: 8.3691

>NTDB_id=167277 AL486_RS05705 WP_104926975.1 1266804..1268357(-) (comM) [Pandoraea apista strain FDAARGOS_126]
MSLAVVSSRAITGMAARAVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRAVRGGLAMASAMAAEPSARALVLPAGSAQEAALVEDATVYGAR
TLLDVCAHLAAPDVAIPLPRAVVANACAASASYGPTGTRGTDFPVMGDMSDVKGQAHAKRALEVAAAGGHHLLFYGPPGT
GKSMLATRLVGLLPALSKAQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASSAALVGGGSAPRPGEISLAHRGVLFLD
ELPEFQRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRSCRCTSDAVARYRGRLSGPLLDRI
DLHVEVPALSAETFAAPASGERSEVVALRVRQARERQLSRQGQLNCGLSGSALETQCALRPDARDVLHRAVTQHHWSART
YHRVLRVARTVADIAGCESIDAHHVGEAVQYREAPPS

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=167277 AL486_RS05705 WP_104926975.1 1266804..1268357(-) (comM) [Pandoraea apista strain FDAARGOS_126]
ATGTCATTGGCAGTTGTCAGCAGCCGGGCGATCACGGGAATGGCGGCGCGCGCGGTCACCGTGGAGGTGCATCTGGCCAA
CGGGCTGCCGGGCCTGTCGCTGGTCGGTCTGCCCGATACCGAGGTCAAGGAAAGCCGTGAGCGCGTGCGTTCGGCATTAC
AGAACAGCCGGTTCGAATTCCCCGCGCGGCGCATCACCGTCAATCTGGCCCCGGCCGATTTACCGAAGGCGTCCGGTTGC
TTCGATCTGCCGATTGCACTGGGCATTCTCGCGGCCAGCGGTCAGTTGCCCGAGGCCGGACTGCGCACGCATGAATTTGC
GGGCGAGTTATCGCTCACAGGGGAACTGCGCGCCGTGCGCGGTGGCCTTGCCATGGCGAGCGCCATGGCGGCCGAACCCT
CGGCGCGTGCGCTGGTGCTGCCCGCCGGCAGTGCGCAGGAAGCGGCGCTCGTCGAAGACGCCACGGTCTACGGCGCACGC
ACGTTGCTCGACGTCTGCGCGCATCTTGCAGCGCCCGACGTCGCAATACCGCTACCGCGTGCCGTCGTGGCCAATGCGTG
TGCGGCGTCGGCAAGCTACGGCCCTACGGGCACACGCGGCACCGACTTTCCCGTTATGGGGGACATGAGCGATGTCAAAG
GACAGGCGCACGCCAAACGCGCACTGGAAGTTGCGGCGGCGGGTGGGCACCACCTCCTTTTCTACGGGCCGCCGGGTACA
GGCAAATCGATGCTGGCAACGCGGCTTGTCGGGCTGCTCCCCGCGTTGAGCAAGGCACAGGCCGTCGAGGCTGCCACGTT
GGCCAGTCTGAGTGCGCAGGGCTTCGATATGCGGCATTGGGGCCGGCGACCGTTTCGCGCGCCGCATCACACGGCATCGT
CAGCGGCATTGGTGGGCGGCGGGAGTGCGCCACGCCCCGGCGAAATCAGCCTTGCGCATCGTGGCGTGCTATTTCTCGAT
GAACTGCCCGAATTCCAGCGGCGTGTGCTTGAAGTCCTGCGCGAACCGTTGGAACTGGGTCATGTGACGATCTCGCGTGC
AGGGGGTCATGCAACGTTTCCCGCCGCCTTTCAACTCGTGGCCGCCATGAACCCGTGCCCGTGCGGCGATCTCGGACATC
CCTCGCGAAGTTGCCGTTGTACGAGTGATGCGGTGGCGCGCTATCGCGGCCGCCTCTCAGGACCGCTGCTCGACCGTATC
GACTTGCATGTGGAGGTGCCGGCACTGAGCGCCGAGACGTTCGCTGCACCGGCCAGTGGCGAGCGCAGCGAAGTCGTAGC
GCTGCGTGTCAGGCAAGCGAGGGAGCGTCAGCTTTCGCGGCAGGGGCAATTGAACTGCGGCCTGTCAGGCAGCGCACTGG
AAACACAATGCGCGTTACGGCCGGACGCTCGTGACGTGCTGCATCGGGCCGTGACGCAGCACCATTGGTCCGCACGCACC
TATCACCGTGTCTTGCGCGTGGCGCGCACGGTCGCCGATATTGCGGGTTGTGAATCGATTGACGCTCACCACGTCGGCGA
GGCCGTGCAATATCGAGAAGCACCGCCGTCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(208-412)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.877

99.226

0.505
  comM Vibrio campbellii strain DS40M4

49.805

99.42

0.495
  comM Haemophilus influenzae Rd KW20

49.708

99.226

0.493
  comM Glaesserella parasuis strain SC1401

49.416

99.42

0.491
  comM Legionella pneumophila str. Paris

47.49

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.49

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.605

99.807

0.435

Multiple sequence alignment