Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL485_RS13425 Genome accession   NZ_CP014017
Coordinates   2799197..2800720 (-) Length   507 a.a.
NCBI ID   WP_048762616.1    Uniprot ID   -
Organism   Serratia liquefaciens strain FDAARGOS_125     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2794197..2805720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL485_RS13400 (AL485_13095) ytfR 2794357..2795871 (+) 1515 WP_048762618.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  AL485_RS13405 (AL485_13100) ytfT 2795889..2796890 (+) 1002 WP_020837503.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  AL485_RS13410 (AL485_13105) yjfF 2796887..2797879 (+) 993 WP_048762617.1 galactofuranose ABC transporter, permease protein YjfF -
  AL485_RS13415 (AL485_13110) hdfR 2797884..2798711 (-) 828 WP_041415741.1 HTH-type transcriptional regulator HdfR -
  AL485_RS13420 (AL485_13115) - 2798831..2799169 (+) 339 WP_020837497.1 DUF413 domain-containing protein -
  AL485_RS13425 (AL485_13120) comM 2799197..2800720 (-) 1524 WP_048762616.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL485_RS13430 (AL485_13125) - 2801062..2802294 (+) 1233 WP_020837491.1 MFS transporter -
  AL485_RS13435 (AL485_25040) ilvL 2802428..2802526 (+) 99 WP_015962288.1 ilv operon leader peptide -
  AL485_RS13440 (AL485_13130) ilvG 2802669..2804315 (+) 1647 WP_020837490.1 acetolactate synthase 2 catalytic subunit -
  AL485_RS13445 (AL485_13135) ilvM 2804312..2804569 (+) 258 WP_020837489.1 acetolactate synthase 2 small subunit -
  AL485_RS13450 (AL485_13140) ilvE 2804592..2805518 (+) 927 WP_020837487.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54573.98 Da        Isoelectric Point: 7.9709

>NTDB_id=167268 AL485_RS13425 WP_048762616.1 2799197..2800720(-) (comM) [Serratia liquefaciens strain FDAARGOS_125]
MSLAVIYTRATLGVQAPSVTVEVHISNGLPGLTMVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRGVSGAIPAALAAMESGRQLVLAAANGPEVGLITQSKTLVADHL
LEVCAFVLGKEDLPVAHAPPAMNNAPEPADLQDILGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLNGLLPPLTD
QEALESIAVASLLHHAAQALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVCFPARVQLIAAMNPSPTGHYQGMHNRASPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGLLSKKRIA
GENSAQVRERVLLARERQLSRAGKINALLNNHEVERDCRLNDADADFLETTLNRLGLSVRAWQRILKVARTLADMAGDRA
IDKRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=167268 AL485_RS13425 WP_048762616.1 2799197..2800720(-) (comM) [Serratia liquefaciens strain FDAARGOS_125]
ATGTCACTGGCAGTGATCTATACCCGGGCCACACTGGGGGTTCAGGCCCCTTCGGTTACGGTGGAAGTGCATATCAGCAA
TGGGTTGCCCGGCCTGACGATGGTCGGCCTGCCGGAAACCACGGTTAAAGAGGCGCGCGATCGAGTGCGCAGCGCCTTGA
TCAATAACGGTTTCACCTTTCCCGCACGGCGTATTACCGTCAATCTGGCACCGGCCGATCTGCCCAAGGAAGGCGGTCGC
TATGATCTACCGATTGCGCTGGCTATCCTGGCGGCTTCCGAACAGCTGCCGGCCGATAAGCTGGCTCACTATGAATTCCT
TGGCGAACTGGCATTATCTGGCGCTCTACGGGGCGTCAGCGGAGCCATCCCCGCCGCGCTGGCCGCCATGGAGTCAGGAC
GGCAATTGGTTTTGGCGGCCGCCAATGGGCCGGAGGTGGGGCTAATTACGCAGAGCAAAACCCTGGTGGCGGACCACCTG
TTGGAGGTGTGCGCCTTTGTGTTGGGTAAAGAGGATTTACCGGTAGCCCATGCGCCGCCGGCAATGAACAACGCGCCCGA
ACCGGCCGATCTGCAGGATATTCTGGGTCAGGAACAGGCAAAGCGCGCGCTGGAAATCGCCGCGGCCGGCGGCCACAACC
TGCTGCTGGTTGGCCCGCCAGGGACCGGGAAAACCATGTTGGCCAGCCGCCTGAATGGCCTTCTCCCGCCGCTGACCGAT
CAGGAAGCACTGGAAAGCATCGCGGTGGCCAGCCTGCTGCATCATGCTGCGCAAGCGCTGCCGTGGCGACAGCGGCCATT
TCGCGCACCGCACCATAGCGCCTCGATGGCCGCTCTGGTCGGCGGGGGTTCGCTGCCGAGGCCGGGTGAAATTTCCATGG
CGCACAATGGTGTCCTGTTTCTGGATGAACTGCCCGAATTCGAAAGGCGGGTACTGGATGCGCTGCGCGAACCGCTGGAG
TCCGGCGAGATCGTGATTTCCCGCGCCAGCGCCAAAGTCTGCTTCCCGGCACGGGTACAGCTGATCGCCGCCATGAACCC
CAGCCCTACCGGGCATTACCAGGGCATGCATAACCGCGCATCGCCACAGCAGGTCCTGCGCTATCTGGGGCGGCTTTCAG
GGCCCTTTCTCGATCGTTTCGATCTCTCGATTGAAGTGCCATTGTTGCCACCAGGCCTGCTTAGCAAAAAGCGCATTGCC
GGTGAAAACAGCGCTCAGGTACGGGAACGAGTGCTGTTGGCGCGTGAAAGGCAGCTCAGTCGAGCGGGGAAGATTAATGC
CCTGCTGAACAATCATGAGGTCGAACGGGATTGCCGACTTAACGACGCGGACGCGGATTTTCTTGAAACGACGTTAAACA
GGTTGGGATTATCGGTTCGCGCCTGGCAGCGGATCCTGAAAGTGGCTCGCACGCTGGCGGATATGGCGGGAGATCGGGCT
ATTGATAAGCGACACTTGAGTGAAGCGCTTGGCTACCGCAGTATGGATCGCCTGCTGCTGCAGCTGCACCGCAGCCTTGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.601

99.803

0.665
  comM Glaesserella parasuis strain SC1401

64.497

100

0.645
  comM Vibrio cholerae strain A1552

64.343

99.014

0.637
  comM Vibrio campbellii strain DS40M4

63.745

99.014

0.631
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.454

Multiple sequence alignment