Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AL483_RS22520 Genome accession   NZ_CP014016
Coordinates   1981185..1981703 (-) Length   172 a.a.
NCBI ID   WP_061054961.1    Uniprot ID   -
Organism   Staphylococcus simulans strain FDAARGOS_124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1976185..1986703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL483_RS22490 (AL483_09705) - 1976296..1976919 (+) 624 WP_061054957.1 NDxxF motif lipoprotein -
  AL483_RS22495 (AL483_09710) - 1976986..1977426 (-) 441 WP_061054958.1 carboxymuconolactone decarboxylase family protein -
  AL483_RS22500 (AL483_09715) - 1977585..1978751 (+) 1167 WP_023014893.1 ArgE/DapE family deacylase -
  AL483_RS22505 (AL483_09720) - 1978808..1979395 (-) 588 WP_061054959.1 histidine phosphatase family protein -
  AL483_RS22510 (AL483_09725) - 1979733..1980344 (-) 612 WP_061054960.1 hypothetical protein -
  AL483_RS22515 (AL483_09730) rpsR 1980889..1981131 (-) 243 WP_002480324.1 30S ribosomal protein S18 -
  AL483_RS22520 (AL483_09735) ssbA 1981185..1981703 (-) 519 WP_061054961.1 single-stranded DNA-binding protein Machinery gene
  AL483_RS22525 (AL483_09740) rpsF 1981725..1982021 (-) 297 WP_002480322.1 30S ribosomal protein S6 -
  AL483_RS22530 (AL483_09745) - 1982183..1983166 (-) 984 WP_061055262.1 thermonuclease family protein -
  AL483_RS22535 (AL483_09750) - 1983320..1983577 (+) 258 WP_002480320.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  AL483_RS22540 (AL483_09755) - 1983571..1983909 (+) 339 WP_061054962.1 type II toxin-antitoxin system PemK/MazF family toxin -
  AL483_RS22545 (AL483_09760) argF 1984185..1985189 (+) 1005 WP_061054963.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19056.70 Da        Isoelectric Point: 5.1953

>NTDB_id=167249 AL483_RS22520 WP_061054961.1 1981185..1981703(-) (ssbA) [Staphylococcus simulans strain FDAARGOS_124]
MINRVVLVGRLTKDPEYRTIPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGQQSGGNNQFQSYGQNYGGQQQGQNTSSYQNNNSSNAGQSDNPFANTN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=167249 AL483_RS22520 WP_061054961.1 1981185..1981703(-) (ssbA) [Staphylococcus simulans strain FDAARGOS_124]
ATGATTAACAGAGTTGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGATACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTTATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAACGTAAGCAATTACTTGTTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCAAAATC
ACAAAACCAACGTCATGGCCAACAATCTGGCGGTAATAACCAATTCCAGAGCTATGGTCAAAACTATGGTGGTCAACAAC
AAGGACAAAATACGTCATCTTATCAAAACAACAATTCATCCAACGCTGGTCAATCAGACAATCCATTCGCAAATACGAAC
GGACCTATTGACATCAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64

100

0.651
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.57
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

63.953

0.366
  ssb Vibrio cholerae strain A1552

34.831

100

0.36

Multiple sequence alignment