Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL479_RS08715 Genome accession   NZ_CP014015
Coordinates   1813646..1815166 (+) Length   506 a.a.
NCBI ID   WP_061075797.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain FDAARGOS_122     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1808646..1820166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL479_RS08690 (AL479_08285) ilvE 1810200..1811129 (-) 930 WP_061075795.1 branched-chain-amino-acid transaminase -
  AL479_RS08695 (AL479_08290) ilvM 1811148..1811411 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  AL479_RS08700 (AL479_08295) ilvG 1811408..1813054 (-) 1647 WP_061075796.1 acetolactate synthase 2 catalytic subunit -
  AL479_RS24025 ilvX 1813057..1813107 (-) 51 WP_193388322.1 peptide IlvX -
  AL479_RS08705 (AL479_23070) ilvL 1813194..1813292 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AL479_RS08715 (AL479_08305) comM 1813646..1815166 (+) 1521 WP_061075797.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL479_RS08720 (AL479_08310) maoP 1815192..1815530 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  AL479_RS08725 (AL479_08315) hdfR 1815650..1816483 (+) 834 WP_061075798.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55025.83 Da        Isoelectric Point: 6.9500

>NTDB_id=167213 AL479_RS08715 WP_061075797.1 1813646..1815166(+) (comM) [Citrobacter amalonaticus strain FDAARGOS_122]
MSLSIVHTRAALGINAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGALRGVPGAISSATEAIRAGRGIIVAKENEEEVGLIEGEGCLVADHL
QAVCAFLEEKHDLSHPVVSNETISVSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLVNSTSVQKLWKHRPFRSPHHSASLTAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHSRNTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ESSLTVKQRVIAARERQHKRQGKLNAHLQNREIREHCPLTDEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEDI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=167213 AL479_RS08715 WP_061075797.1 1813646..1815166(+) (comM) [Citrobacter amalonaticus strain FDAARGOS_122]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGCTGGGTATCAATGCACCGGCGATTACTATCGAAGTGCATATCAGCAA
CGGTTTACCCGGTTTAACACTGGTGGGGTTACCAGAAACGACCGTCAAAGAGGCGCGCGACCGGGTACGCAGCGCGATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCTGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCATCTGAGCAGCTTACAACCCATAAACTCGACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGCGCCATATCCAGTGCAACCGAAGCGATACGGGCGGGAA
GGGGCATTATCGTGGCAAAAGAGAACGAAGAAGAAGTCGGGCTGATTGAGGGTGAAGGATGTCTGGTTGCCGATCATCTA
CAAGCCGTCTGTGCCTTCCTGGAAGAAAAACATGACCTTAGCCATCCTGTTGTCAGCAACGAAACTATCAGTGTGTCATC
TGACGATCTCAGCGACATTATTGGTCAGGAGCAAGGGAAGCGCAGTCTTGAGATCACCGCCGCGGGTGGGCACAATCTGC
TGTTAGTTGGCCCACCGGGTACAGGGAAAACGATGCTTGCCAGCCGTCTTAATGGTCTGTTGCCGGCATTAAGTAACGAA
GAAGCCCTGGAAAGCGCTGCCATCCTCAGTCTGGTTAATTCAACCAGCGTGCAAAAATTGTGGAAACACCGACCTTTTCG
CTCACCACACCACAGCGCATCCCTGACCGCGATGGTCGGTGGCGGTACCATCCCCGCGCCAGGCGAAATTTCTTTGGCAC
ACAATGGCATACTGTTTCTTGATGAGTTGCCTGAGTTTGAACGACGGACATTAGATGCTCTACGTGAACCGATAGAGTCC
GGTCAGATCCACCTTTCGCGCACGCGCGCTAAGATCACTTATCCTGCGCGCTTTCAATTGGTGGCGGCAATGAATCCCAG
TCCCACGGGTCATTATCAGGGCAACCATAGCCGCAATACGCCTGAACAGACATTACGCTATCTCAGTCGGCTATCGGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTCTCCCGCCGCCTGGCATACTCAGCCAGCCCGGTGTAAAGGGA
GAAAGCAGCCTTACAGTTAAACAACGGGTCATTGCAGCACGGGAACGTCAGCATAAACGCCAGGGAAAACTGAATGCGCA
CCTGCAAAACAGGGAGATACGTGAACACTGTCCGTTAACGGACGAAGACGCGCAGTGGCTTGAAGAGACACTCATCCATC
TTGGATTGTCTATACGGGCCTGGCAGCGGTTATTGAAGGTATCGAGGACTATTGCCGATCTGGCGCAAGCCGAAGACATT
TCACGGAGACACTTGCAGGAAGCCGTCAGCTACCGGGCGATAGATCGACTGCTTGCTCACCTGCAGAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60

99.802

0.599
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Haemophilus influenzae Rd KW20

58.893

100

0.589
  comM Vibrio campbellii strain DS40M4

58.02

99.802

0.579
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

99.407

0.427

Multiple sequence alignment