Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL479_RS06955 Genome accession   NZ_CP014015
Coordinates   1446204..1446731 (-) Length   175 a.a.
NCBI ID   WP_046493925.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain FDAARGOS_122     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1441204..1451731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL479_RS06940 (AL479_06610) - 1441906..1442187 (+) 282 WP_042999048.1 YjcB family protein -
  AL479_RS06945 (AL479_06615) - 1442748..1445456 (+) 2709 WP_061075569.1 cation-transporting P-type ATPase -
  AL479_RS06950 (AL479_06620) - 1445522..1445953 (-) 432 WP_061075570.1 universal stress protein -
  AL479_RS06955 (AL479_06625) ssb 1446204..1446731 (-) 528 WP_046493925.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AL479_RS06960 (AL479_06630) uvrA 1446984..1449806 (+) 2823 WP_061075571.1 excinuclease ABC subunit UvrA -
  AL479_RS06965 (AL479_06635) - 1449848..1450198 (-) 351 WP_061075572.1 MmcQ/YjbR family DNA-binding protein -
  AL479_RS06970 (AL479_06640) aphA 1450325..1451038 (-) 714 WP_061075573.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18907.95 Da        Isoelectric Point: 5.2456

>NTDB_id=167210 AL479_RS06955 WP_046493925.1 1446204..1446731(-) (ssb) [Citrobacter amalonaticus strain FDAARGOS_122]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=167210 AL479_RS06955 WP_046493925.1 1446204..1446731(-) (ssb) [Citrobacter amalonaticus strain FDAARGOS_122]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTCGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAGATGAAAGAGCAGACAG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGTCAGTTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTTGAGAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGTGGCGGCGCACCGGCAGGCGGTCAGCAGCAGCAGGGCAGCTGGGGTC
AGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGTGCGCAGTCTCGCCCGCAGCAGCAGTCAGCACCGGCAGCG
CCGTCTAATGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.766
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.606
  ssb Neisseria meningitidis MC58

47.778

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371

Multiple sequence alignment