Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AWR26_RS24830 Genome accession   NZ_CP014007
Coordinates   5244181..5245701 (+) Length   506 a.a.
NCBI ID   WP_064568894.1    Uniprot ID   A0AA94HA55
Organism   Kosakonia oryzae strain Ola 51     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5236681..5251074 5244181..5245701 within 0


Gene organization within MGE regions


Location: 5236681..5251074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWR26_RS24795 (AWR26_24300) ilvA 5237179..5238723 (-) 1545 WP_139227976.1 threonine ammonia-lyase, biosynthetic -
  AWR26_RS24800 (AWR26_24305) ilvD 5238726..5240576 (-) 1851 WP_007369194.1 dihydroxy-acid dehydratase -
  AWR26_RS24805 (AWR26_24310) ilvE 5240764..5241693 (-) 930 WP_043955902.1 branched-chain-amino-acid transaminase -
  AWR26_RS24810 (AWR26_24315) ilvM 5241711..5241980 (-) 270 WP_007369196.1 acetolactate synthase 2 small subunit -
  AWR26_RS24815 (AWR26_24320) ilvG 5241977..5243623 (-) 1647 WP_064568893.1 acetolactate synthase 2 catalytic subunit -
  AWR26_RS25940 (AWR26_25495) ilvX 5243626..5243676 (-) 51 WP_202626166.1 peptide IlvX -
  AWR26_RS24825 (AWR26_25500) ilvL 5243763..5243861 (-) 99 WP_015966468.1 ilv operon leader peptide -
  AWR26_RS24830 (AWR26_24325) comM 5244181..5245701 (+) 1521 WP_064568894.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AWR26_RS24835 (AWR26_24330) - 5245727..5246065 (-) 339 WP_007369199.1 DUF413 domain-containing protein -
  AWR26_RS24840 (AWR26_24335) hdfR 5246172..5247005 (+) 834 WP_139227974.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55515.58 Da        Isoelectric Point: 7.3965

>NTDB_id=167111 AWR26_RS24830 WP_064568894.1 5244181..5245701(+) (comM) [Kosakonia oryzae strain Ola 51]
MALSVIYTRAALGVTAPLVTVEVHISNGLPGLTIVGLPETTVKEARDRVRSAIINSGYEFPAKRITINLAPADLPKEGGR
YDLPIAIALLAASEQLTAPMLSDYEFVGELALTGALRGVSGAISCVMEAVKARRRIIIAQENEAEASLAETEDCRIAAHL
QEVCAFLEGKHALSPPSPFEGVQERHNEDLSDVIGQQQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLGGLLPPLNNQ
EALESAAVMSVFNSNSLIRHWRRRPFRTPHHSASLAAMVGGGSLPGPGEISLAHNGVLFLDELPEFERRVLDALREPLES
GQIHISRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPAAGLMSQPQQKG
ECSEAVRSRVIQAHARQHQRQKKLNARLESSETKQFCLLAKEDGEWLEETLTRLGFSIRAWQRLLKVARTIADLEQQEEI
QRTHLQEALSYRAIDRLLIHLQNMLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=167111 AWR26_RS24830 WP_064568894.1 5244181..5245701(+) (comM) [Kosakonia oryzae strain Ola 51]
ATGGCATTGTCAGTCATTTATACCCGGGCGGCTCTTGGCGTTACTGCGCCATTGGTGACGGTCGAAGTGCACATCAGCAA
CGGACTTCCAGGGCTGACCATTGTCGGATTACCAGAGACGACCGTCAAAGAGGCACGCGATCGGGTACGCAGCGCGATCA
TCAATAGTGGTTATGAATTCCCGGCCAAGCGGATTACGATCAATCTCGCACCGGCCGATCTCCCAAAGGAAGGAGGACGA
TACGATTTACCCATTGCTATTGCGCTTCTGGCGGCCTCAGAGCAACTAACAGCACCCATGCTGAGTGACTACGAGTTTGT
TGGTGAACTAGCCCTTACAGGCGCATTGCGTGGAGTCTCCGGCGCTATCTCTTGTGTCATGGAAGCAGTGAAAGCCAGGC
GTCGCATCATCATTGCTCAGGAAAATGAAGCGGAGGCCAGCCTCGCTGAAACAGAAGATTGCCGCATAGCTGCCCATTTG
CAGGAGGTATGTGCTTTTCTGGAAGGAAAACACGCCCTCTCACCTCCATCCCCCTTTGAGGGCGTCCAGGAGAGGCACAA
CGAGGATCTGAGCGATGTAATTGGACAGCAGCAAGGGAAGCGCGCTTTAGAAATCACTGCGGCAGGCGGACATAATTTAT
TGTTGATAGGGCCGCCAGGCACCGGAAAAACCATGCTGGCCAGTAGACTGGGAGGATTATTACCGCCGCTTAATAATCAG
GAAGCCCTGGAAAGCGCAGCAGTGATGAGTGTATTCAACAGCAATAGCCTCATTCGCCATTGGCGACGAAGGCCATTCAG
AACGCCTCATCACAGCGCTTCCCTGGCGGCAATGGTTGGGGGAGGTTCATTACCAGGTCCCGGCGAGATTTCGCTGGCGC
ACAACGGCGTGCTGTTTCTGGATGAACTACCTGAGTTTGAGCGACGCGTACTGGATGCTCTGCGCGAACCGCTGGAGTCA
GGCCAAATTCATATTTCACGGACAAGAGCAAAAATCACTTATCCTGCGCGCTTTCAGTTGATTGCGGCCATGAATCCCAG
CCCAACCGGGCACTATCAGGGTAACCATAATCGCAGCACGCCTGAACAGACACTGCGGTATCTGGGAAAGTTATCGGGCC
CTTTTCTCGACCGGTTTGATCTCTCGCTGGAAATACCGCTACCCGCTGCCGGGTTAATGAGTCAACCCCAGCAGAAAGGT
GAATGCAGTGAGGCCGTGCGATCACGCGTTATTCAGGCTCATGCTCGTCAGCATCAACGGCAGAAGAAGCTCAACGCCCG
GCTGGAAAGCAGCGAAACAAAACAGTTCTGCTTGCTTGCAAAAGAGGATGGGGAGTGGCTGGAAGAGACGTTAACACGTC
TGGGTTTCTCCATACGGGCCTGGCAACGTCTGCTGAAGGTAGCAAGAACTATTGCTGATCTGGAACAGCAGGAGGAAATC
CAGCGAACGCACCTGCAGGAAGCACTAAGTTATCGCGCAATCGACAGGTTACTCATTCATCTGCAAAATATGCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Vibrio campbellii strain DS40M4

59.562

99.209

0.591
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Legionella pneumophila str. Paris

50.602

98.419

0.498
  comM Legionella pneumophila strain ERS1305867

50.602

98.419

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.86

100

0.445

Multiple sequence alignment