Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   APT61_RS00775 Genome accession   NZ_CP013990
Coordinates   170522..172042 (-) Length   506 a.a.
NCBI ID   WP_059306970.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain USDA-ARS-USMARC-60222     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 165522..177042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT61_RS00765 (APT61_00765) hdfR 169218..170039 (-) 822 WP_032615217.1 HTH-type transcriptional regulator HdfR -
  APT61_RS00770 (APT61_00770) - 170158..170496 (+) 339 WP_032615215.1 DUF413 domain-containing protein -
  APT61_RS00775 (APT61_00775) comM 170522..172042 (-) 1521 WP_059306970.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  APT61_RS22270 ilvL 172384..172482 (+) 99 WP_023620831.1 ilv operon leader peptide -
  APT61_RS23775 ilvX 172569..172619 (+) 51 WP_196221615.1 peptide IlvX -
  APT61_RS00780 (APT61_00780) ilvG 172622..174268 (+) 1647 WP_059306971.1 acetolactate synthase 2 catalytic subunit -
  APT61_RS00785 (APT61_00785) ilvM 174265..174534 (+) 270 WP_032615208.1 acetolactate synthase 2 small subunit -
  APT61_RS00790 (APT61_00790) ilvE 174551..175480 (+) 930 WP_032615204.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55368.69 Da        Isoelectric Point: 8.4780

>NTDB_id=166942 APT61_RS00775 WP_059306970.1 170522..172042(-) (comM) [Leclercia adecarboxylata strain USDA-ARS-USMARC-60222]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSSSRLSTYEFVGELALTGALRGVPGAISGALAAIQAGREIIVANDNAAEVSLIEQKGCLVAGHL
QEVCAFLEGRHELAAPVQEPFAIEKSDRDIRDIIGQEQGKRALEITAAGAHNLLLIGPPGTGKTMLASRLDGLLPPLSNH
EALESAAILSLVNASSMYKQWRQRPFRAPHHSASLVAMVGGGAIPVPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINISRTRAKISYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGLLSQTHTRG
ESSITVRNRVIAAQERQRVRQHKLNAHLDNAEIRRYCLLAAEDALWLEETLTRFGLSVRAWQRLLKVARTIADLEESEQI
ERRHLQEALSYRAIDRLLLHLQKMLR

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=166942 APT61_RS00775 WP_059306970.1 170522..172042(-) (comM) [Leclercia adecarboxylata strain USDA-ARS-USMARC-60222]
ATGTCACTGTCGGTTGTTTATACCCGCGCTGCGTTAGGCGTCAAAGCGCCGCTGATTTCCGTTGAGGTTCACCTCAGTAA
TGGCCTGCCGGGCTTAACCCTGGTCGGCCTGCCAGAAACCACCGTCAAGGAAGCCAGAGACCGGGTACGCAGCGCAATCA
TCAATAGCGGTTATACCTTTCCGGCCAAAAAGATCACCATCAACCTAGCGCCTGCCGATTTACCCAAGGAAGGCGGGCGA
TATGATTTACCTATCGCCATTGCGCTTCTCGCTGCCTCTGAGCAGCTCTCCTCTTCCAGACTGAGCACATACGAGTTCGT
GGGTGAGCTGGCGCTTACAGGAGCATTAAGAGGGGTTCCCGGCGCAATATCGGGTGCCCTGGCGGCCATTCAGGCTGGCA
GAGAGATTATTGTCGCCAATGATAACGCTGCCGAAGTTAGCCTTATTGAACAAAAAGGCTGTCTGGTGGCCGGGCATTTG
CAGGAGGTATGCGCCTTTCTTGAAGGCCGACACGAGCTGGCTGCGCCCGTTCAGGAGCCATTCGCGATAGAAAAGAGCGA
CCGGGACATCAGAGATATCATCGGTCAGGAACAAGGTAAACGGGCGCTGGAGATCACTGCGGCTGGCGCGCACAATCTGC
TGCTGATTGGTCCCCCTGGTACTGGTAAAACCATGCTCGCGAGCCGACTCGATGGCCTGCTCCCGCCACTCAGCAACCAT
GAAGCGCTGGAGAGTGCGGCAATCCTGAGTCTGGTTAACGCCTCATCGATGTATAAGCAGTGGCGTCAGCGCCCTTTTCG
CGCACCGCACCACAGCGCCTCGCTCGTGGCCATGGTGGGCGGGGGCGCGATTCCCGTGCCGGGTGAGATCTCGCTGGCGC
ATAACGGCATTCTCTTTCTGGACGAGTTACCTGAGTTTGAAAGACGTGTACTGGATGCCTTACGCGAGCCTATCGAATCC
GGGCAGATAAATATCTCCCGCACCCGCGCAAAGATCAGTTATCCCGCTCGCTTTCAGCTTATCGCCGCCATGAATCCCAG
CCCAACGGGGCACTATCAAGGCAACCATAATCGCTGTTCGCCAGAGCAGACGCTTCGCTATCTGGGACGCTTATCGGGAC
CATTTTTGGATCGCTTCGATTTATCGCTTGAGATCCCGCTACCGCCGCCAGGGTTATTAAGCCAGACGCATACCAGAGGA
GAATCCAGCATCACCGTGCGAAACAGAGTGATTGCTGCGCAGGAGCGACAGCGGGTACGACAACATAAACTCAATGCTCA
CCTGGATAATGCGGAGATACGCAGGTATTGCTTACTTGCGGCAGAAGACGCCCTGTGGCTGGAAGAGACCCTTACCCGGT
TTGGCCTGTCGGTGCGTGCCTGGCAGCGGCTGTTGAAGGTGGCCCGTACAATTGCCGATCTGGAAGAGAGTGAACAGATT
GAACGCAGGCACCTGCAGGAAGCCCTGAGCTATCGCGCTATCGATCGCTTGCTGCTGCACCTGCAAAAGATGCTGAGATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.1

100

0.615
  comM Glaesserella parasuis strain SC1401

60.75

100

0.609
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Vibrio campbellii strain DS40M4

59.443

99.407

0.591
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.661

100

0.431

Multiple sequence alignment