Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   APT59_RS01610 Genome accession   NZ_CP013987
Coordinates   351311..352801 (-) Length   496 a.a.
NCBI ID   WP_059313260.1    Uniprot ID   A0AAX3KUQ2
Organism   Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 346311..357801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT59_RS01590 (APT59_01590) - 346431..347819 (-) 1389 WP_059313256.1 NorM family multidrug efflux MATE transporter -
  APT59_RS01595 (APT59_01595) - 347934..348863 (+) 930 WP_059313257.1 LysR substrate-binding domain-containing protein -
  APT59_RS01600 (APT59_01600) - 349024..350994 (+) 1971 WP_059313258.1 methyl-accepting chemotaxis protein -
  APT59_RS01605 (APT59_01605) - 351123..351314 (+) 192 WP_059313259.1 hypothetical protein -
  APT59_RS01610 (APT59_01610) comM 351311..352801 (-) 1491 WP_059313260.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  APT59_RS01615 (APT59_01615) - 352864..353163 (-) 300 WP_059313261.1 accessory factor UbiK family protein -
  APT59_RS01620 (APT59_01620) glnK 353554..353892 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  APT59_RS01625 (APT59_01625) - 353941..355281 (+) 1341 WP_059313262.1 ammonium transporter -
  APT59_RS01630 (APT59_01630) - 355454..355873 (+) 420 WP_059313263.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  APT59_RS01635 (APT59_01635) sutA 355944..356276 (+) 333 WP_059313264.1 transcriptional regulator SutA -
  APT59_RS01640 (APT59_01640) - 357087..357299 (-) 213 WP_059313265.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52470.36 Da        Isoelectric Point: 7.5641

>NTDB_id=166851 APT59_RS01610 WP_059313260.1 351311..352801(-) (comM) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
MSLALVHTRAQVGVEAPPVVVEAHLANGLPALTLVGLPETAVREAKDRVRSAILNAGFEFPSRRITLNLAPADLPKDGGR
FDLALAIGILAASGQLPAQGLESYECLGELALSGAVRPVRGVLPAALAARTAGRTLVVPRANAEEACLASGLAVLAVDHL
LEFAGHLSGQAPLTPYQPSGLLRTPLPYPDLAEVQGQQAAKRALVVAAAGAHNLLLAGPPGTGKTLLASRLPGLLPPLDE
EEALQVAAIHSVAGPEPLEHWPQRPFRQPHHSASGPALVGGGSRPGPGEITLAHRGVLFLDELPEFDRKVLEVLREPLES
GEIVIARARERVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPEQIQRYRGKLSGPLLDRIDLHLTVAREHLRLGASSAA
ELSTAEAAGQVAAARALQMARQGRPNALLGLDQLHQVCALSDADQRWLESAGERLNLSLRALHRVIKVARTLADLAGDTD
IQRAHLAEALQYRAAH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=166851 APT59_RS01610 WP_059313260.1 351311..352801(-) (comM) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
ATGTCGCTTGCCCTCGTTCACACCCGCGCCCAGGTGGGCGTGGAAGCCCCGCCCGTGGTCGTCGAGGCGCACTTGGCCAA
TGGCCTGCCTGCCCTCACCCTGGTGGGTTTGCCGGAAACCGCCGTCCGCGAAGCCAAGGACCGGGTCCGCAGTGCCATCC
TCAATGCCGGCTTCGAGTTTCCCAGCCGCCGCATCACCCTCAATCTCGCGCCTGCCGATCTGCCCAAGGATGGCGGTCGC
TTCGACCTCGCCCTGGCCATCGGCATTTTGGCCGCGAGCGGGCAGTTGCCGGCCCAGGGTCTTGAAAGCTACGAATGCCT
GGGCGAACTGGCGCTGTCGGGTGCGGTACGGCCAGTCCGCGGCGTGCTGCCGGCAGCGCTTGCCGCCCGAACTGCCGGAC
GCACCCTGGTGGTACCGCGGGCCAACGCCGAGGAGGCCTGCCTGGCAAGTGGCCTCGCCGTGCTGGCGGTCGATCACCTG
CTGGAGTTCGCCGGTCACCTGAGTGGCCAGGCCCCGCTGACGCCCTACCAGCCCAGTGGACTGCTGCGTACGCCCCTCCC
CTATCCCGATCTGGCCGAGGTCCAGGGTCAGCAAGCGGCCAAGCGTGCCCTCGTAGTAGCCGCGGCAGGTGCCCACAACC
TGTTGCTCGCCGGGCCACCCGGTACCGGCAAGACCCTGCTCGCCAGTCGCCTGCCGGGCCTGCTGCCGCCACTGGACGAA
GAAGAAGCGCTGCAGGTGGCCGCCATTCATTCCGTGGCCGGACCCGAGCCGCTGGAGCACTGGCCACAGCGGCCCTTTCG
CCAACCGCACCATTCGGCGTCGGGTCCGGCGCTGGTGGGCGGTGGCAGCCGCCCCGGGCCTGGCGAGATCACCCTGGCCC
ATCGCGGCGTGCTGTTTCTCGATGAGTTGCCCGAATTCGATCGCAAGGTGCTGGAAGTGCTGCGCGAGCCTCTGGAAAGC
GGCGAGATCGTCATCGCCCGGGCACGGGAGCGGGTGCGCTTTCCAGCGCGCTTCCAGCTGGTGGCGGCGATGAATCCCTG
TCCTTGTGGCTACCTGGGTGATCCCAGTGGGCGCTGTCGTTGCAGCCCGGAGCAGATCCAGCGCTATCGCGGCAAGTTGT
CCGGTCCGCTGCTGGACCGCATCGATCTGCACCTGACCGTGGCGCGCGAGCATCTGCGTCTGGGCGCCTCGTCGGCCGCC
GAACTCTCGACTGCCGAGGCAGCCGGTCAGGTGGCTGCGGCCCGTGCCCTCCAGATGGCTCGCCAGGGGCGCCCCAACGC
CCTGCTCGGCCTCGACCAGTTGCACCAGGTCTGCGCCCTGAGCGACGCGGATCAGCGTTGGCTGGAAAGCGCTGGCGAGC
GCCTGAATCTATCCCTGCGCGCCCTGCACCGGGTCATCAAGGTGGCTCGCACCCTGGCCGACCTGGCCGGCGACACCGAC
ATCCAGCGCGCGCACCTGGCCGAAGCGCTGCAGTATCGGGCCGCTCACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.452

100

0.565
  comM Vibrio campbellii strain DS40M4

56.048

100

0.56
  comM Glaesserella parasuis strain SC1401

53.493

100

0.54
  comM Haemophilus influenzae Rd KW20

53.386

100

0.54
  comM Legionella pneumophila str. Paris

49.6

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.6

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.635

100

0.464

Multiple sequence alignment