Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AUL54_RS10840 Genome accession   NZ_CP013950
Coordinates   2261574..2262089 (+) Length   171 a.a.
NCBI ID   WP_016937325.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2256574..2267089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS10820 (AUL54_10830) - 2257651..2257857 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  AUL54_RS10825 (AUL54_10835) - 2257904..2259907 (+) 2004 WP_060963798.1 molybdopterin-dependent oxidoreductase -
  AUL54_RS10830 (AUL54_10840) ychF 2260035..2261135 (+) 1101 WP_045925735.1 redox-regulated ATPase YchF -
  AUL54_RS10835 (AUL54_10845) rpsF 2261247..2261534 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  AUL54_RS10840 (AUL54_10850) ssbA 2261574..2262089 (+) 516 WP_016937325.1 single-stranded DNA-binding protein SsbA Machinery gene
  AUL54_RS10845 (AUL54_10855) rpsR 2262133..2262372 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  AUL54_RS10850 (AUL54_10860) - 2262556..2263134 (+) 579 WP_060963799.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  AUL54_RS10855 (AUL54_10865) - 2263131..2263658 (+) 528 WP_060963800.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AUL54_RS10860 (AUL54_10870) xth 2263703..2264461 (+) 759 WP_060963801.1 exodeoxyribonuclease III -
  AUL54_RS10865 (AUL54_10875) - 2264524..2265462 (+) 939 WP_060963802.1 LacI family DNA-binding transcriptional regulator -
  AUL54_RS10870 (AUL54_10880) - 2265518..2265898 (+) 381 WP_060963803.1 VOC family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18604.18 Da        Isoelectric Point: 4.7621

>NTDB_id=166477 AUL54_RS10840 WP_016937325.1 2261574..2262089(+) (ssbA) [Bacillus sp. SDLI1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNSQRRNQGNSFNDDPFANDGK
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=166477 AUL54_RS10840 WP_016937325.1 2261574..2262089(+) (ssbA) [Bacillus sp. SDLI1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGTCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTACGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATAATC
CGTTCGGCGGAAATCAGAACAGCCAGAGAAGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGCAAG
CCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

97.674

100

0.982
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.608
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.392

Multiple sequence alignment