Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AFK66_RS18345 Genome accession   NZ_CP013940
Coordinates   3915019..3916539 (+) Length   506 a.a.
NCBI ID   WP_007780013.1    Uniprot ID   -
Organism   Cronobacter malonaticus LMG 23826     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3910019..3921539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK66_RS18330 (AFK66_018905) - 3911580..3912509 (-) 930 WP_004387276.1 branched-chain amino acid transaminase -
  AFK66_RS18335 (AFK66_018910) ilvM 3912530..3912787 (-) 258 WP_007766319.1 acetolactate synthase 2 small subunit -
  AFK66_RS18340 (AFK66_018915) ilvG 3912784..3914430 (-) 1647 WP_032978021.1 acetolactate synthase 2 catalytic subunit -
  AFK66_RS21795 ilvL 3914569..3914667 (-) 99 WP_071601137.1 ilv operon leader peptide -
  AFK66_RS18345 (AFK66_018920) comM 3915019..3916539 (+) 1521 WP_007780013.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AFK66_RS18350 (AFK66_018925) - 3916619..3916957 (-) 339 WP_004387280.1 DUF413 domain-containing protein -
  AFK66_RS18355 (AFK66_018930) hdfR 3917065..3917898 (+) 834 WP_023899645.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54873.24 Da        Isoelectric Point: 7.5578

>NTDB_id=166377 AFK66_RS18345 WP_007780013.1 3915019..3916539(+) (comM) [Cronobacter malonaticus LMG 23826]
MSLSVIHTRAALGVKAPLVTVEVHISTGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAHHL
QEVCAFLEGKTQLECAEPSDFEFKEPAGDLSEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLATRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDISLEIPLPPPGMLSQVGQSG
ESSAQVRKRVMESRECQFARQGKLNAMLDNGEIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQSQRI
GRKHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=166377 AFK66_RS18345 WP_007780013.1 3915019..3916539(+) (comM) [Cronobacter malonaticus LMG 23826]
ATGTCGTTATCTGTTATCCATACTCGTGCTGCGCTTGGAGTAAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCAC
CGGGCTGCCCGGCCTGACAATCGTCGGCCTGCCAGAAACTACCGTTAAAGAGGCAAGAGATCGTGTACGCAGCGCGCTCA
TTAATAGCGGTTATGAGTTCCCGGCTAAAAAGATAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAGGGTGGACGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCGTCTGAGCAATTAAGCGCATCTCATCTCGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACCGGCGCGCTGAGAGGCGTTCCCGGTGCAATTTCAGCCGCCATTGAGGCTCTGGGATGTAAAA
GAAAAATTATCGTTGCACATGATAATGGCCCTGAGGTGGGACTCATCAATAAAGAAGGTTGCCTTGTGGCTCATCATTTA
CAGGAGGTCTGCGCCTTTCTGGAAGGGAAAACGCAGCTCGAATGCGCCGAACCATCTGACTTTGAATTCAAAGAGCCTGC
CGGAGACCTGAGTGAGGTCATCGGGCAACCTCAGGGGAAACGCGCACTGGAGTTAACAGCAGCGGGCGGGCATAACCTGC
TTTTTATTGGGCCTCCCGGTACAGGTAAAACGATGCTTGCCACCAGACTCAATGGGTTACTACCCCCTCTGAGCGACCAG
GAAGCCCTTGAGAGCGCTGCGATACTAAGCCTGGTTAACCCCGTCTCTTTGCACCATCAATGGCGTCAGCGTCCATTCAG
AGCCCCTCACCATAGCGCGTCGCTGAATGCCATGGTGGGTGGAGGAGCCATTCCAGCACCTGGAGAAATCTCACTTGCCC
ATAATGGCGTGCTTTTTCTGGATGAGTTACCTGAATTCGAGCGTCGCGTGTTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAGATTCATCTTTCACGCACCCGGGCAAAACTAACGTATCCGGCACGCTTTCAACTTATTGCTGCTATGAATCCCAG
CCCAACAGGACACTACAAAGGAAACCATAACCGCTGCTCGCCAGAGCAGACGCTGCGTTATCTCGGTCGGCTTTCCGGGC
CATTCCTTGACAGGTTTGATATCTCGCTTGAAATTCCGCTGCCTCCGCCGGGTATGCTTAGTCAGGTGGGACAGTCTGGC
GAAAGCAGCGCGCAAGTGAGGAAACGTGTAATGGAAAGCAGAGAATGTCAGTTTGCTCGGCAGGGCAAGCTTAACGCCAT
GCTGGACAATGGGGAGATACGTCAGTTTTGTGTGCTTAGCCCGGAGGACGCGCAGTGGCTGGAGGCAGCGCTAATCAAAC
TGGGACTGTCGGTTCGCGCATGGCAGCGCTTACTCAAAGTGGCGCGTACTATCGCTGATTGTGAACAGAGTCAAAGGATT
GGCCGTAAACATCTGCAGGAGGCCCTGAGCTATCGTGCGATAGACAGGATGCTGGCGCATTTGCAAAACATGATGGCATA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.904

100

0.613
  comM Glaesserella parasuis strain SC1401

59.961

100

0.601
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Vibrio cholerae strain A1552

59.761

99.209

0.593
  comM Legionella pneumophila str. Paris

47.984

98.024

0.47
  comM Legionella pneumophila strain ERS1305867

47.984

98.024

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443

Multiple sequence alignment