Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   AVT04_RS06610 Genome accession   NZ_CP013939
Coordinates   1227581..1229734 (+) Length   717 a.a.
NCBI ID   WP_059257386.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1198057..1281162 1227581..1229734 within 0


Gene organization within MGE regions


Location: 1198057..1281162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS06490 (AVT04_06490) addA 1199224..1202877 (+) 3654 WP_011227531.1 helicase-exonuclease AddAB subunit AddA -
  AVT04_RS06495 (AVT04_06495) - 1203271..1204004 (-) 734 Protein_1184 DUF554 domain-containing protein -
  AVT04_RS06500 (AVT04_06500) - 1204278..1205010 (+) 733 Protein_1185 ABC transporter ATP-binding protein -
  AVT04_RS06505 (AVT04_06505) - 1205013..1206602 (+) 1590 WP_011226516.1 hypothetical protein -
  AVT04_RS06510 (AVT04_06510) proB 1206723..1207526 (+) 804 WP_002948808.1 glutamate 5-kinase -
  AVT04_RS06515 (AVT04_06515) - 1207528..1208778 (+) 1251 WP_011226515.1 glutamate-5-semialdehyde dehydrogenase -
  AVT04_RS06520 (AVT04_06520) - 1209132..1209428 (+) 297 WP_231108735.1 hypothetical protein -
  AVT04_RS06525 (AVT04_06525) - 1209648..1210004 (+) 357 WP_011226513.1 DUF805 domain-containing protein -
  AVT04_RS10420 - 1210278..1210532 (+) 255 WP_011227529.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  AVT04_RS11215 (AVT04_06535) - 1210643..1211029 (+) 387 WP_041827096.1 hypothetical protein -
  AVT04_RS11220 (AVT04_06540) - 1211026..1211190 (+) 165 WP_231108736.1 hypothetical protein -
  AVT04_RS11225 (AVT04_06545) - 1211287..1211637 (+) 351 WP_011227526.1 hypothetical protein -
  AVT04_RS06550 (AVT04_06550) rsmH 1211805..1212755 (+) 951 WP_002888254.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  AVT04_RS06555 (AVT04_06555) ftsL 1212758..1213078 (+) 321 WP_011226509.1 cell division protein FtsL -
  AVT04_RS06560 (AVT04_06560) pbp2X 1213082..1215349 (+) 2268 WP_011226508.1 penicillin-binding protein PBP2X -
  AVT04_RS06565 (AVT04_06565) mraY 1215351..1216373 (+) 1023 WP_011227524.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  AVT04_RS06570 (AVT04_06570) - 1216448..1217791 (+) 1344 WP_002948888.1 DEAD/DEAH box helicase -
  AVT04_RS06575 (AVT04_06575) - 1218639..1219994 (+) 1356 WP_059257451.1 bifunctional metallophosphatase/5'-nucleotidase -
  AVT04_RS06580 (AVT04_06580) - 1220049..1220771 (+) 723 WP_011226505.1 YutD family protein -
  AVT04_RS06585 (AVT04_06585) rlmN 1220775..1221944 (+) 1170 WP_011227522.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  AVT04_RS06590 (AVT04_06590) - 1221946..1222473 (+) 528 WP_011227521.1 VanZ family protein -
  AVT04_RS11230 (AVT04_06595) - 1222678..1222884 (+) 207 WP_002948879.1 hypothetical protein -
  AVT04_RS06600 (AVT04_06600) - 1223072..1224829 (+) 1758 WP_011226502.1 ABC transporter ATP-binding protein -
  AVT04_RS06605 (AVT04_06605) - 1224822..1226567 (+) 1746 WP_011226501.1 ABC transporter ATP-binding protein -
  AVT04_RS06610 (AVT04_06610) comA/nlmT 1227581..1229734 (+) 2154 WP_059257386.1 peptide cleavage/export ABC transporter Regulator
  AVT04_RS06615 (AVT04_06615) - 1229750..1231118 (+) 1369 Protein_1208 bacteriocin secretion accessory protein -
  AVT04_RS06620 (AVT04_06620) - 1231133..1231294 (+) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  AVT04_RS11235 - 1231312..1232115 (-) 804 WP_224103634.1 ATP-binding protein -
  AVT04_RS06630 (AVT04_06630) - 1232652..1233383 (-) 732 WP_002948869.1 LytR/AlgR family response regulator transcription factor -
  AVT04_RS06635 (AVT04_06635) - 1233633..1233875 (+) 243 WP_011227518.1 Blp family class II bacteriocin -
  AVT04_RS10020 - 1234021..1235411 (-) 1391 Protein_1213 IS3-like element ISSth1b family transposase -
  AVT04_RS06655 (AVT04_06655) - 1235854..1238121 (-) 2268 WP_011227515.1 Xaa-Pro dipeptidyl-peptidase -
  AVT04_RS06660 (AVT04_06660) gla 1238242..1239105 (+) 864 WP_059257387.1 aquaglyceroporin Gla -
  AVT04_RS06665 (AVT04_06665) - 1239279..1239554 (-) 276 WP_224103608.1 CPBP family intramembrane glutamic endopeptidase -
  AVT04_RS06670 (AVT04_06670) - 1239775..1240728 (-) 954 WP_059257318.1 IS30 family transposase -
  AVT04_RS06675 (AVT04_06675) - 1241081..1241836 (+) 756 WP_011681560.1 CppA family protein -
  AVT04_RS06680 (AVT04_06680) - 1241836..1242792 (+) 957 WP_002951776.1 serine hydrolase domain-containing protein -
  AVT04_RS06690 (AVT04_06690) - 1242994..1243644 (+) 651 WP_022096490.1 ABC transporter ATP-binding protein -
  AVT04_RS06695 (AVT04_06695) - 1243641..1244396 (+) 756 WP_002951770.1 ABC transporter permease -
  AVT04_RS06700 (AVT04_06700) - 1244472..1245158 (+) 687 WP_011227510.1 hypothetical protein -
  AVT04_RS06705 (AVT04_06705) - 1245246..1245840 (+) 595 Protein_1223 site-specific integrase -
  AVT04_RS11515 mobV 1246320..1246828 (+) 509 Protein_1224 MobV family relaxase -
  AVT04_RS06720 (AVT04_06720) - 1246874..1247176 (+) 303 WP_231108737.1 restriction endonuclease subunit S -
  AVT04_RS06725 (AVT04_06725) - 1247510..1247963 (-) 454 Protein_1226 GNAT family N-acetyltransferase -
  AVT04_RS06730 (AVT04_06730) - 1248014..1248796 (-) 783 Protein_1227 carbonic anhydrase -
  AVT04_RS06735 (AVT04_06735) pflB 1249063..1251372 (-) 2310 WP_011226473.1 formate C-acetyltransferase -
  AVT04_RS06740 (AVT04_06740) dinB 1251650..1252753 (+) 1104 WP_011227504.1 DNA polymerase IV -
  AVT04_RS06745 (AVT04_06745) - 1253039..1253272 (+) 234 WP_002947030.1 hypothetical protein -
  AVT04_RS06750 (AVT04_06750) - 1253853..1254680 (+) 828 WP_041827091.1 transporter substrate-binding domain-containing protein -
  AVT04_RS06755 (AVT04_06755) - 1255069..1255815 (+) 747 WP_095559509.1 amino acid ABC transporter permease -
  AVT04_RS06760 (AVT04_06760) - 1255815..1256558 (+) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein -
  AVT04_RS06765 (AVT04_06765) - 1256773..1256997 (+) 225 WP_011226468.1 DUF4059 family protein -
  AVT04_RS06770 (AVT04_06770) trxB 1257063..1257983 (+) 921 WP_011226467.1 thioredoxin-disulfide reductase -
  AVT04_RS06775 (AVT04_06775) rsmD 1258074..1258673 (+) 600 WP_011227500.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AVT04_RS06780 (AVT04_06780) coaD 1258707..1259204 (+) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  AVT04_RS06785 (AVT04_06785) sepM 1259182..1260258 (+) 1077 WP_011226464.1 SepM family pheromone-processing serine protease Regulator
  AVT04_RS06790 (AVT04_06790) - 1260343..1261287 (+) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  AVT04_RS06795 (AVT04_06795) - 1261284..1261832 (+) 549 WP_004197152.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  AVT04_RS06800 (AVT04_06800) - 1261829..1262071 (+) 243 WP_011227499.1 hypothetical protein -
  AVT04_RS06805 (AVT04_06805) - 1262080..1264146 (+) 2067 WP_011227498.1 cation:proton antiporter -
  AVT04_RS06810 (AVT04_06810) - 1264765..1265547 (-) 783 WP_011226459.1 ABC transporter ATP-binding protein -
  AVT04_RS06815 (AVT04_06815) - 1265660..1266991 (+) 1332 WP_002951727.1 hemolysin family protein -
  AVT04_RS10675 - 1267689..1267799 (+) 111 WP_014621906.1 LPXTG cell wall anchor domain-containing protein -
  AVT04_RS06820 (AVT04_06820) pflA 1267987..1268787 (+) 801 WP_002946980.1 pyruvate formate-lyase-activating protein -
  AVT04_RS06825 (AVT04_06825) - 1268993..1269463 (+) 471 WP_011227497.1 membrane protein -
  AVT04_RS11240 - 1269679..1270250 (-) 572 Protein_1248 IS30 family transposase -
  AVT04_RS06835 (AVT04_06835) - 1270430..1270882 (-) 453 WP_002946987.1 universal stress protein -
  AVT04_RS06840 (AVT04_06840) - 1271237..1272451 (+) 1215 WP_011226456.1 pyridoxal phosphate-dependent aminotransferase -
  AVT04_RS06845 (AVT04_06845) codY 1272711..1273496 (+) 786 WP_002951720.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  AVT04_RS06850 (AVT04_06850) - 1273559..1274110 (+) 552 WP_002946999.1 cysteine hydrolase family protein -
  AVT04_RS06855 (AVT04_06855) - 1274233..1275081 (+) 849 WP_041828318.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AVT04_RS06860 (AVT04_06860) msrA 1275093..1275602 (+) 510 WP_002946589.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AVT04_RS06865 (AVT04_06865) - 1275755..1277196 (+) 1442 Protein_1255 6-phospho-beta-glucosidase -
  AVT04_RS10040 - 1277560..1277721 (+) 162 WP_180473551.1 glycosyltransferase -
  AVT04_RS06870 (AVT04_06870) - 1277734..1277988 (+) 255 WP_011226449.1 glycosyl transferase -
  AVT04_RS06875 (AVT04_06875) gatC 1278128..1278430 (+) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  AVT04_RS06880 (AVT04_06880) gatA 1278430..1279896 (+) 1467 WP_002946584.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80569.46 Da        Isoelectric Point: 6.8330

>NTDB_id=166342 AVT04_RS06610 WP_059257386.1 1227581..1229734(+) (comA/nlmT) [Streptococcus thermophilus strain S9]
MFRFRRTFVPQIDMRNCGVAALALVAKYYGSDYSLAHLRELAKTNKEGTTALGLVEAAKKIGFETRAIKAEMSLFEMEDV
PYPFIAHVNKDGKLQHYYVIYKSTKDYLIIGDPDPSVKVTKMTKERFEKEWTGVTLFMGPEPSYKPHKDKKNGLWDFLPL
IFKQRSLIANIVFASLLVTLINILGSYYLQGILDEYVPNQMKSTLGIISIGLVVTYVLQQMMTFARDYLLTILSQRLTID
VILSYIRHIFELPMSFFATRRTGEVISRFSDANSIIDALASTILSLFLDFSIVIIVGGVLLIQNSNLFKLVLCSVPIYTL
IVFAFMKPFELMNHDVMQSNAMVNSAIIEDINGIETIKSLTSEEVCYQKIDGEFVDYLDNSFRLSKLSILQTSLKQGAQL
ILNVLILWTGAQLVMGNTISIGQLITFNMLLSYFTNPLENIINLQTKLQSAKVANTRLNEVYLIESEFGQSDDTYQEGIA
DGDITVTDLSYKYGFGRDTLTDVSLTIRQGEKISFVGVSGSGKTTLAKMLVNFYQPYKGHIDFNGQNISRIDKKTLRQHI
NYLPQQSYIFSGSVLENLTLGAARGITQADILKACEIAEIRQDIENMPMGFQTELSDGAGLSGGQKQRIALARALLTKSP
VLILDEATSGLDVLTEKQVIDNLLALKDKTIIFVAHRLSIAERTDRIVVIDQGRVVETGSHQDLMSYPGFYYQLFRK

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=166342 AVT04_RS06610 WP_059257386.1 1227581..1229734(+) (comA/nlmT) [Streptococcus thermophilus strain S9]
ATGTTTCGTTTTCGTAGGACTTTTGTCCCTCAAATAGACATGAGGAATTGTGGAGTTGCTGCCTTGGCATTAGTGGCCAA
GTACTATGGTTCAGATTATTCATTAGCACATCTGCGTGAGTTGGCGAAGACCAATAAAGAAGGGACAACTGCCTTAGGTC
TTGTAGAGGCTGCTAAAAAAATTGGCTTTGAAACGAGAGCTATAAAGGCTGAAATGTCGCTCTTTGAGATGGAAGATGTT
CCTTATCCTTTTATTGCTCATGTTAATAAAGATGGGAAGCTTCAACATTATTATGTTATTTATAAAAGCACCAAGGATTA
TCTGATAATTGGAGACCCTGATCCAAGTGTAAAAGTAACTAAAATGACTAAAGAGCGTTTTGAGAAAGAGTGGACAGGTG
TTACTCTTTTTATGGGACCGGAACCCAGTTATAAACCACATAAGGATAAGAAAAATGGACTCTGGGACTTTCTCCCTTTG
ATCTTTAAACAAAGGTCCTTGATAGCTAATATTGTCTTTGCCAGTCTCTTGGTTACTTTAATAAATATTTTAGGTTCCTA
TTATTTACAAGGTATTCTAGACGAATATGTCCCTAATCAAATGAAGTCTACCTTAGGAATTATCTCAATTGGATTAGTTG
TGACCTATGTTTTACAACAAATGATGACTTTTGCAAGAGATTATCTCTTAACCATACTGAGTCAGCGATTGACCATTGAC
GTTATCTTGTCCTACATACGACATATCTTTGAACTCCCAATGTCTTTTTTTGCCACAAGACGTACAGGGGAGGTTATCTC
ACGTTTTAGTGATGCTAACTCTATTATCGATGCTCTGGCTTCGACGATATTATCACTTTTCCTTGATTTCTCTATTGTGA
TTATCGTAGGAGGCGTGTTATTGATACAAAATAGCAATCTCTTCAAGCTAGTTCTTTGTTCGGTTCCAATTTATACCCTT
ATCGTCTTTGCCTTTATGAAACCTTTTGAGCTAATGAATCATGACGTCATGCAGAGTAATGCTATGGTTAATTCAGCCAT
CATTGAGGACATTAATGGGATTGAAACCATAAAGTCACTAACCAGCGAAGAAGTATGCTATCAAAAGATTGATGGTGAGT
TTGTTGACTATCTAGACAATTCTTTTCGCCTTTCTAAGTTATCTATACTACAAACATCATTGAAACAAGGTGCTCAACTT
ATTTTAAATGTACTTATCCTCTGGACAGGTGCTCAGTTGGTGATGGGAAATACCATTTCGATAGGACAATTGATTACTTT
TAATATGTTGCTTTCTTACTTCACGAATCCTTTGGAAAATATCATTAACCTGCAAACCAAGTTACAGTCTGCTAAGGTAG
CTAATACTAGGCTCAATGAGGTCTATCTGATTGAATCAGAGTTTGGACAAAGTGATGATACCTATCAAGAAGGCATTGCG
GATGGAGATATCACTGTTACGGATTTATCTTATAAATATGGTTTTGGTCGTGATACTTTGACTGATGTCAGTTTGACGAT
TAGACAAGGAGAAAAAATCAGTTTTGTTGGTGTCAGTGGATCTGGTAAGACTACTCTAGCTAAAATGTTGGTCAATTTTT
ATCAACCATATAAGGGGCACATAGATTTTAATGGTCAAAATATTAGTCGCATAGACAAGAAAACTCTTCGTCAACATATT
AACTATCTCCCTCAGCAATCCTATATATTTAGTGGTAGTGTTTTAGAAAATCTTACTTTAGGTGCAGCACGGGGTATTAC
GCAAGCTGATATTTTGAAAGCTTGTGAAATAGCAGAAATTCGTCAAGATATTGAAAACATGCCTATGGGGTTTCAGACAG
AGCTGTCTGATGGAGCAGGTCTGTCTGGAGGGCAAAAGCAACGTATCGCTTTGGCGCGTGCACTACTAACGAAATCTCCT
GTACTAATCTTAGATGAAGCAACTAGCGGATTGGATGTTTTGACAGAAAAGCAGGTTATTGATAACCTCCTAGCACTAAA
AGATAAAACGATCATCTTTGTAGCACACAGGCTTAGTATCGCTGAGCGGACCGACCGTATCGTAGTCATTGATCAGGGAC
GCGTAGTGGAGACAGGTTCTCATCAAGACCTGATGTCTTATCCAGGTTTCTATTATCAATTATTTAGAAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

67.927

99.582

0.676

  comA Streptococcus mitis NCTC 12261

66.385

99.163

0.658

  comA Streptococcus pneumoniae Rx1

65.963

99.163

0.654

  comA Streptococcus pneumoniae D39

65.963

99.163

0.654

  comA Streptococcus pneumoniae R6

65.963

99.163

0.654

  comA Streptococcus mitis SK321

65.682

99.163

0.651

  comA Streptococcus pneumoniae TIGR4

65.541

99.163

0.65

  comA Streptococcus gordonii str. Challis substr. CH1

64.286

99.582

0.64


Multiple sequence alignment