Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   AUC44_RS02645 Genome accession   NZ_CP013910
Coordinates   550961..551512 (-) Length   183 a.a.
NCBI ID   WP_062157277.1    Uniprot ID   -
Organism   Deinococcus actinosclerus strain BM2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 545961..556512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC44_RS02615 (AUC44_02600) - 546175..547044 (-) 870 WP_062157271.1 PSP1 domain-containing protein -
  AUC44_RS02620 (AUC44_02605) rocF 547302..548201 (-) 900 WP_062157272.1 arginase -
  AUC44_RS02625 (AUC44_02610) - 548319..548852 (-) 534 WP_062157273.1 GNAT family N-acetyltransferase -
  AUC44_RS02630 (AUC44_02615) - 548991..549638 (+) 648 WP_062157274.1 metallophosphoesterase family protein -
  AUC44_RS02635 (AUC44_02620) - 549992..550414 (+) 423 WP_062157275.1 hypothetical protein -
  AUC44_RS02640 (AUC44_02625) - 550424..550858 (+) 435 WP_062157276.1 hypothetical protein -
  AUC44_RS02645 (AUC44_02630) ddrB 550961..551512 (-) 552 WP_062157277.1 single-stranded DNA-binding protein Machinery gene
  AUC44_RS02650 (AUC44_02635) - 551569..552393 (-) 825 WP_062159637.1 hypothetical protein -
  AUC44_RS02655 (AUC44_02640) menC 552399..553508 (-) 1110 WP_062157278.1 o-succinylbenzoate synthase -
  AUC44_RS02665 (AUC44_02650) - 555621..555875 (+) 255 WP_062157279.1 acyl-CoA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20350.74 Da        Isoelectric Point: 7.4653

>NTDB_id=165974 AUC44_RS02645 WP_062157277.1 550961..551512(-) (ddrB) [Deinococcus actinosclerus strain BM2]
MLHIEFTTDLGAKVTVDVENASALLDTQRQYGRLGWTSGEIPSGGYQFPLENEPDFDWHLIGARKWTSPDGEELVIHKGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKSTDPEHIREKSDGEFEYVTLAIFRGGKRQERYATPGSRPGTPTQAPTQAARP
APTRPAPALARPAPTRADDEPPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=165974 AUC44_RS02645 WP_062157277.1 550961..551512(-) (ddrB) [Deinococcus actinosclerus strain BM2]
ATGCTACACATTGAATTCACCACCGACCTGGGCGCGAAAGTCACCGTGGACGTCGAGAACGCCTCGGCACTCCTCGACAC
CCAGCGCCAGTACGGCCGCCTCGGCTGGACCAGCGGCGAGATCCCCAGCGGCGGCTACCAGTTCCCCCTGGAGAACGAAC
CCGACTTCGACTGGCACCTCATCGGCGCCCGCAAATGGACCAGCCCCGACGGCGAGGAACTCGTCATCCACAAGGGTCAC
GCCTACCGCCGCCGTGAACTCGAGGCGGTCGACAGCCGCAAGATGAAACTCCCCGCCGCCGTCAAATACTCCCGCGGCGC
CAAGAGCACCGACCCCGAACACATCCGGGAGAAGAGCGACGGCGAATTCGAGTACGTGACCCTCGCCATCTTCCGCGGCG
GCAAACGGCAGGAGCGCTACGCCACCCCCGGCAGCCGCCCCGGCACGCCCACGCAGGCCCCCACCCAGGCGGCGCGTCCC
GCCCCCACCCGCCCGGCCCCCGCACTGGCCCGGCCTGCCCCGACCCGCGCGGACGACGAACCACCGTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

75

89.617

0.672

Multiple sequence alignment