Detailed information NTG0165973

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: A7J08_RS00345
• Genome accession: NZ_CP017088
• Coordinates: 58520..59521 (+)
• Length: 333 a.a.
• NCBI ID: WP_079739303.1
• Uniprot ID: -
• Organism: Streptococcus suis strain SRD478
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 53520..64521

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7J08_RS00320 (A7J08_00315)	-	53620..54198 (+)	579	WP_011921662.1	CPBP family intramembrane glutamic endopeptidase	-
A7J08_RS00325 (A7J08_00320)	-	54213..54641 (+)	429	WP_053867150.1	Msa family membrane protein	-
A7J08_RS00330 (A7J08_00325)	-	54634..55506 (+)	873	WP_053867149.1	ABC transporter ATP-binding protein	-
A7J08_RS00335 (A7J08_00330)	-	55512..56282 (+)	771	WP_053867148.1	hypothetical protein	-
A7J08_RS00340 (A7J08_00335)	-	56285..57997 (+)	1713	WP_053867147.1	ABC transporter ATP-binding protein	-
A7J08_RS10325	-	58099..58272 (+)	174	WP_169050576.1	hypothetical protein	-
A7J08_RS00345 (A7J08_00340)	ruvB	58520..59521 (+)	1002	WP_079739303.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
A7J08_RS00350 (A7J08_00345)	-	59521..60267 (+)	747	WP_148115620.1	GNAT family N-acetyltransferase	-
A7J08_RS00355 (A7J08_00350)	-	60269..60904 (+)	636	WP_053867371.1	HAD-IA family hydrolase	-
A7J08_RS00360 (A7J08_00355)	comR	61152..62051 (+)	900	WP_053867370.1	transcriptional regulator	Regulator
A7J08_RS00365 (A7J08_00365)	-	62675..63964 (+)	1290	Protein_53	IS4 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37641.17 Da
• Isoelectric Point: 4.4708

>NTDB_id=165973 A7J08_RS00345 WP_079739303.1 58520..59521(+) (ruvB) [Streptococcus suis strain SRD478]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFEMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSINIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=165973 A7J08_RS00345 WP_079739303.1 58520..59521(+) (ruvB) [Streptococcus suis strain SRD478]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGACGAGGAGTACGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGACAAGGTTAAGGACCAGTTGAAAATCTTTATCGAGGCGGCAAAACTCCGTGATGAAGCCTTGG
ACCATACTCTTCTTTTTGGTCCTCCAGGTTTAGGTAAAACCACTATGGCTTTCGTTATTGCCAACGAGTTGGGGGTCAAC
ATCAAGCAGACCAGTGGGCCTGTCATTGAAAAGGCAGGCGATTTGGTGGCCCTTCTCAATGATTTGGAGCCTGGTGATGT
CCTCTTTATTGACGAGATTCACCGTATGCCCATGGCAGTTGAGGAAATTCTCTACTCTGCCATGGAAGACTTTTACATCG
ATATCATGATTGGAGCAGGAGAAGCCAGCCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCAACCACT
CGTGCGGGGATGCTATCCAATCCCCTGCGGGCTCGTTTTGGCATCACTGGTCACATGGAGTATTACGAACTGGCTGATTT
GACCGAGATTGTCGAGCGGACAGCGGACATCTTTGAGATGGAGATTACCCATGAAGCTGCTATTGAGCTGGCTCGTCGTT
CCCGCGGAACTCCACGTATCGCCAATCGCCTGCTCAAGCGGGTGCGGGATTTTGCCCAGATTATGGGCGACGGCCTGATT
GACGATAGCATTACGGACAAGGCTCTGACCATGCTGGACGTGGACCGAGAGGGGCTGGATTATGTGGACCAGAAGATTCT
TCGGACCATGATTGAGATGTATGGTGGCGGTCCCGTCGGCCTCAACACCCTATCGATCAATATCGCTGAAGAGCGTGAAA
CGGTGGAGGACATGTATGAGCCCTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTCGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.896	97.898	0.577
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474