Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AUC44_RS02350 Genome accession   NZ_CP013910
Coordinates   480459..481439 (-) Length   326 a.a.
NCBI ID   WP_082688917.1    Uniprot ID   -
Organism   Deinococcus actinosclerus strain BM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 475459..486439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC44_RS16075 - 475530..476267 (+) 738 WP_197408570.1 SGNH/GDSL hydrolase family protein -
  AUC44_RS16385 - 476457..476597 (+) 141 WP_157445136.1 hypothetical protein -
  AUC44_RS02315 (AUC44_02300) - 476819..477178 (+) 360 WP_062157214.1 hypothetical protein -
  AUC44_RS02320 (AUC44_02305) - 477175..477525 (+) 351 WP_062157215.1 hypothetical protein -
  AUC44_RS02325 (AUC44_02310) - 477515..478120 (+) 606 WP_062157216.1 glycoside hydrolase family 108 protein -
  AUC44_RS02330 (AUC44_02315) - 478277..478654 (+) 378 WP_062157217.1 hypothetical protein -
  AUC44_RS16390 - 478746..479033 (-) 288 WP_157445137.1 hypothetical protein -
  AUC44_RS16970 (AUC44_02320) - 479047..479694 (-) 648 WP_062157218.1 excalibur calcium-binding domain-containing protein -
  AUC44_RS17170 - 479762..479890 (+) 129 WP_257721367.1 hypothetical protein -
  AUC44_RS02340 (AUC44_02325) - 479900..480106 (+) 207 WP_062157219.1 hypothetical protein -
  AUC44_RS02345 (AUC44_02330) - 480172..480396 (-) 225 WP_062157220.1 hypothetical protein -
  AUC44_RS02350 (AUC44_02335) comM 480459..481439 (-) 981 WP_082688917.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AUC44_RS17250 (AUC44_02340) - 481542..481919 (-) 378 WP_062157221.1 Sec-independent protein translocase subunit TatA/TatB -
  AUC44_RS02360 (AUC44_02345) - 482037..483977 (-) 1941 WP_062157222.1 serine/threonine-protein kinase -
  AUC44_RS02365 (AUC44_02350) - 484054..485763 (-) 1710 WP_062157223.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 33257.44 Da        Isoelectric Point: 5.9614

>NTDB_id=165973 AUC44_RS02350 WP_082688917.1 480459..481439(-) (comM) [Deinococcus actinosclerus strain BM2]
MLARVRSAALFGVDAVPVEVEVDVSPGLPAFTVVGLPDQSVSEARERVRAAVRNAGLPFPAARITVNLAPADLRKEGPLY
DLPIALGVLAAQEVVPLGALAGTLVAGELALDGSLRPVAGAVNLALLAGSLGAAVLLPEGNAPEAALIEDARVFGAASLL
DAVRHLTGQAPLGVTPPPVPDAPDGEALLDLADLKGQSGARRALEVALAGGHNLLLVGSPGSGKTMLARRAPGLLPPLTR
SEALEVTRIHSAAGLLTARGRLSVQPPYRAPHHTVSDAGLIGGGGVPRPGEVSLAHRGLLFLDEFPEFSRKALETLRQPL
DIGCPV

Nucleotide


Download         Length: 981 bp        

>NTDB_id=165973 AUC44_RS02350 WP_082688917.1 480459..481439(-) (comM) [Deinococcus actinosclerus strain BM2]
GTGCTGGCGCGCGTGCGGAGTGCGGCGCTGTTCGGGGTGGACGCGGTGCCGGTGGAGGTCGAGGTGGACGTCTCGCCGGG
CCTGCCCGCATTCACGGTGGTGGGCCTGCCGGACCAGTCGGTGAGCGAGGCGCGCGAGCGGGTGCGGGCGGCGGTGCGGA
ACGCGGGCCTGCCGTTCCCGGCGGCGCGGATCACGGTGAACCTCGCCCCGGCGGATCTGCGCAAGGAGGGCCCGCTGTAT
GACCTGCCGATTGCGCTGGGCGTGCTGGCCGCGCAGGAGGTCGTGCCGCTGGGGGCGCTGGCGGGGACGCTGGTGGCGGG
TGAACTGGCGCTGGACGGGTCGCTGCGGCCGGTGGCGGGCGCGGTGAATCTGGCGCTGTTGGCGGGGTCGCTGGGCGCGG
CCGTGCTCCTCCCAGAGGGGAACGCGCCCGAGGCGGCCCTGATCGAGGACGCGCGGGTGTTCGGGGCGGCGTCCCTGCTG
GACGCGGTGCGGCACCTGACCGGGCAGGCGCCGCTGGGGGTGACGCCGCCGCCCGTGCCGGACGCCCCGGACGGCGAGGC
GCTGCTGGATCTGGCCGACCTGAAGGGCCAGTCGGGGGCGCGGCGGGCGCTGGAGGTCGCGCTGGCCGGGGGGCATAACC
TGCTGCTGGTGGGCTCGCCGGGCAGCGGGAAGACGATGCTGGCGCGCCGCGCGCCAGGGCTGCTGCCGCCGCTGACGCGC
TCGGAGGCGCTGGAGGTGACGCGCATCCACTCAGCGGCGGGCCTGCTGACGGCGCGCGGTCGCCTGAGCGTGCAGCCGCC
GTACCGCGCGCCGCACCACACCGTGTCGGACGCGGGACTGATCGGGGGTGGGGGCGTGCCCCGCCCGGGCGAGGTGAGTC
TCGCCCACCGGGGCCTCCTCTTTCTCGACGAGTTCCCGGAGTTCAGCCGCAAGGCGCTGGAAACATTGCGGCAGCCGCTG
GATATCGGTTGTCCGGTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-321)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.758

98.773

0.482
  comM Haemophilus influenzae Rd KW20

47.72

100

0.482
  comM Vibrio campbellii strain DS40M4

48.447

98.773

0.479
  comM Legionella pneumophila str. Paris

47.531

99.387

0.472
  comM Legionella pneumophila strain ERS1305867

47.531

99.387

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.769

99.693

0.466
  comM Glaesserella parasuis strain SC1401

44.817

100

0.451

Multiple sequence alignment