Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BARD7_RS11895 | Genome accession | NZ_CP016913 |
| Coordinates | 2426436..2427440 (-) | Length | 334 a.a. |
| NCBI ID | WP_065981977.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain RD7-7 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2421436..2432440
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BARD7_RS11865 (BARD7_02432) | - | 2422463..2423119 (-) | 657 | WP_065981974.1 | DUF421 domain-containing protein | - |
| BARD7_RS11870 (BARD7_02433) | - | 2423286..2423672 (+) | 387 | WP_013353039.1 | TIGR04086 family membrane protein | - |
| BARD7_RS11875 (BARD7_02434) | yajC | 2423724..2423984 (-) | 261 | WP_003152695.1 | preprotein translocase subunit YajC | - |
| BARD7_RS11880 (BARD7_02435) | tgt | 2424016..2425161 (-) | 1146 | WP_065981975.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| BARD7_RS11885 (BARD7_02436) | queA | 2425189..2426217 (-) | 1029 | WP_065522675.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| BARD7_RS11890 (BARD7_02437) | - | 2426243..2426443 (-) | 201 | WP_065981976.1 | DUF2905 domain-containing protein | - |
| BARD7_RS11895 (BARD7_02438) | ruvB | 2426436..2427440 (-) | 1005 | WP_065981977.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BARD7_RS11900 (BARD7_02439) | ruvA | 2427451..2428056 (-) | 606 | WP_003152683.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| BARD7_RS11905 (BARD7_02440) | - | 2428191..2428667 (-) | 477 | WP_038463270.1 | intercompartmental signaling factor BofC | - |
| BARD7_RS19585 (BARD7_02441) | - | 2428833..2428952 (-) | 120 | WP_373925702.1 | hypothetical protein | - |
| BARD7_RS11910 (BARD7_02442) | - | 2429077..2429670 (-) | 594 | WP_065981978.1 | YhcN/YlaJ family sporulation lipoprotein | - |
| BARD7_RS11915 (BARD7_02443) | safA | 2429818..2430978 (-) | 1161 | WP_065981979.1 | spore coat assembly protein SafA | - |
| BARD7_RS11920 (BARD7_02444) | nadA | 2431105..2432208 (-) | 1104 | WP_065981980.1 | quinolinate synthase NadA | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37200.52 Da Isoelectric Point: 4.7246
>NTDB_id=165339 BARD7_RS11895 WP_065981977.1 2426436..2427440(-) (ruvB) [Bacillus amyloliquefaciens strain RD7-7]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTKEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPACD
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTKEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPACD
Nucleotide
Download Length: 1005 bp
>NTDB_id=165339 BARD7_RS11895 WP_065981977.1 2426436..2427440(-) (ruvB) [Bacillus amyloliquefaciens strain RD7-7]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAACCTCGC
CCAGTACATCGGGCAGCAGAAGGTAAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTTG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGAAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGACCCGCTATCGAAAGACCGGGAGACTTGGCAGCCATTCTGACGGCGCTCGAACCCGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGGTCAATCGAAGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGTAAAGGCCCGTCCGCCCGCTCCGTCCGCCTTGACCTTCCGCCTTTTACGCTGGTAGGGGCGACGACC
AGGGTCGGCTTATTGACCGCGCCGCTCAGAGACCGGTTCGGGGTGCTGTCCCGCCTTGAATACTATACGAAGGAAGAACT
GACAGATATCGTGTCAAGAACGGCTGAAGTATTCGAAGTTGAAATCGAAGAAGCCCCGGCTTTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGACGCGCTCGGCCTTGACCATATTGACCATAAGCTGCT
GATGGGCATGATTGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGAGAAGAACCGCATA
CAATAGAAGATGTGTACGAACCGTATCTTCTTCAGATCGGATTTCTCCAAAGGACGCCGAGAGGACGGGTCGTGACCCCG
GCTGTGTATGAGCATTTTCGATTGGAGGCACCCGCCTGTGACTGA
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAACCTCGC
CCAGTACATCGGGCAGCAGAAGGTAAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTTG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGAAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGACCCGCTATCGAAAGACCGGGAGACTTGGCAGCCATTCTGACGGCGCTCGAACCCGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGGTCAATCGAAGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGTAAAGGCCCGTCCGCCCGCTCCGTCCGCCTTGACCTTCCGCCTTTTACGCTGGTAGGGGCGACGACC
AGGGTCGGCTTATTGACCGCGCCGCTCAGAGACCGGTTCGGGGTGCTGTCCCGCCTTGAATACTATACGAAGGAAGAACT
GACAGATATCGTGTCAAGAACGGCTGAAGTATTCGAAGTTGAAATCGAAGAAGCCCCGGCTTTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGACGCGCTCGGCCTTGACCATATTGACCATAAGCTGCT
GATGGGCATGATTGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGAGAAGAACCGCATA
CAATAGAAGATGTGTACGAACCGTATCTTCTTCAGATCGGATTTCTCCAAAGGACGCCGAGAGGACGGGTCGTGACCCCG
GCTGTGTATGAGCATTTTCGATTGGAGGCACCCGCCTGTGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
91.617 |
100 |
0.916 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae R6 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae D39 |
60.736 |
97.605 |
0.593 |
| ruvB | Synechocystis sp. PCC 6803 |
58.359 |
98.503 |
0.575 |
| ruvB | Helicobacter pylori 26695 |
52.439 |
98.204 |
0.515 |