Detailed information NTG0165340

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: BARD7_RS11900
• Genome accession: NZ_CP016913
• Coordinates: 2427451..2428056 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens strain RD7-7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2422451..2433056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BARD7_RS11865 (BARD7_02432)	-	2422463..2423119 (-)	657	WP_065981974.1	DUF421 domain-containing protein	-
BARD7_RS11870 (BARD7_02433)	-	2423286..2423672 (+)	387	WP_013353039.1	TIGR04086 family membrane protein	-
BARD7_RS11875 (BARD7_02434)	yajC	2423724..2423984 (-)	261	WP_003152695.1	preprotein translocase subunit YajC	-
BARD7_RS11880 (BARD7_02435)	tgt	2424016..2425161 (-)	1146	WP_065981975.1	tRNA guanosine(34) transglycosylase Tgt	-
BARD7_RS11885 (BARD7_02436)	queA	2425189..2426217 (-)	1029	WP_065522675.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
BARD7_RS11890 (BARD7_02437)	-	2426243..2426443 (-)	201	WP_065981976.1	DUF2905 domain-containing protein	-
BARD7_RS11895 (BARD7_02438)	ruvB	2426436..2427440 (-)	1005	WP_065981977.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BARD7_RS11900 (BARD7_02439)	ruvA	2427451..2428056 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
BARD7_RS11905 (BARD7_02440)	-	2428191..2428667 (-)	477	WP_038463270.1	intercompartmental signaling factor BofC	-
BARD7_RS19585 (BARD7_02441)	-	2428833..2428952 (-)	120	WP_373925702.1	hypothetical protein	-
BARD7_RS11910 (BARD7_02442)	-	2429077..2429670 (-)	594	WP_065981978.1	YhcN/YlaJ family sporulation lipoprotein	-
BARD7_RS11915 (BARD7_02443)	safA	2429818..2430978 (-)	1161	WP_065981979.1	spore coat assembly protein SafA	-
BARD7_RS11920 (BARD7_02444)	nadA	2431105..2432208 (-)	1104	WP_065981980.1	quinolinate synthase NadA	-
BARD7_RS11925 (BARD7_02445)	nadC	2432208..2433056 (-)	849	WP_065981981.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=165340 BARD7_RS11900 WP_003152683.1 2427451..2428056(-) (ruvA) [Bacillus amyloliquefaciens strain RD7-7]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=165340 BARD7_RS11900 WP_003152683.1 2427451..2428056(-) (ruvA) [Bacillus amyloliquefaciens strain RD7-7]
GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGGATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG
CCTTTTCTTTGTACGGCTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAATGTCACCGGCATCGGTCCG
AAAGGGGCGCTCGCCATTCTCGGTTCCGGTGATCCGGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCTGGTGTGGGCAAAAAAACGGCACGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGATGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGATGAGGCGCTT
GAAGCGCTCAGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGACCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408