Detailed information NTG0164692

Bioinformatically predicted

Overview

• Name: comA
• Type: Regulator
• Locus tag: AVR83_RS03370
• Genome accession: NZ_CP013753
• Coordinates: 687594..689744 (-)
• Length: 716 a.a.
• NCBI ID: WP_003641986.1
• Uniprot ID: A0AAW3FTH1
• Organism: Lactiplantibacillus plantarum strain DF
• Function: processing and transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 682594..694744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVR83_RS03340 (AVR83_03335)	-	682799..683002 (-)	204	WP_003641993.1	hypothetical protein	-
AVR83_RS03345 (AVR83_03340)	-	683140..683826 (-)	687	WP_003641992.1	CPBP family intramembrane glutamic endopeptidase	-
AVR83_RS03350 (AVR83_03345)	-	683920..684600 (-)	681	WP_003641991.1	CPBP family intramembrane glutamic endopeptidase	-
AVR83_RS03355 (AVR83_03350)	-	684687..685355 (-)	669	WP_003641990.1	CPBP family intramembrane glutamic endopeptidase	-
AVR83_RS03360 (AVR83_03355)	-	685422..685967 (-)	546	WP_003641989.1	CPBP family intramembrane glutamic endopeptidase	-
AVR83_RS03365 (AVR83_03360)	-	686202..687578 (-)	1377	WP_003641987.1	HlyD family secretion protein	-
AVR83_RS03370 (AVR83_03365)	comA	687594..689744 (-)	2151	WP_003641986.1	peptide cleavage/export ABC transporter	Regulator
AVR83_RS03375 (AVR83_03370)	plnE	690011..690181 (+)	171	WP_003641985.1	two-peptide bacteriocin plantaricin EF subunit PlnE	-
AVR83_RS03380 (AVR83_03375)	plnF	690206..690364 (+)	159	WP_003643811.1	two-peptide bacteriocin plantaricin EF subunit PlnF	-
AVR83_RS03385 (AVR83_03380)	-	690463..691236 (+)	774	WP_003646470.1	CPBP family intramembrane glutamic endopeptidase	-
AVR83_RS03390 (AVR83_03385)	-	691541..692284 (-)	744	WP_003641982.1	response regulator transcription factor	-
AVR83_RS03395 (AVR83_03390)	-	692403..693146 (-)	744	WP_011100999.1	LytTR family transcriptional regulator DNA-binding domain-containing protein	-
AVR83_RS03400 (AVR83_03395)	-	693147..694319 (-)	1173	WP_223843867.1	sensor histidine kinase	-

Sequence

Protein

• Length: 716 a.a.
• Molecular weight: 79952.66 Da
• Isoelectric Point: 6.6531

>NTDB_id=164692 AVR83_RS03370 WP_003641986.1 687594..689744(-) (comA) [Lactiplantibacillus plantarum strain DF]
MHWRNYVAQVDEMDCGVAALAMILKNYGSTTSLAYLRNIAKTSLEGTTALGLVKTAEKLGFETKAIQADMSLFEVQDLPL
PFIVHVTKNGDLQHFYVVVKTSKTHVVIADPDPTVAVISMSKERFESEWSGVALFFAPKSEYKPVKQDKGSLWGFIPSLL
KQRRLVINIVLAAVLITIISICGSYFLQAVIDTYIPNNMHSTLAVVAIGLIVFYTFQAIFTYAQNFLLAVLGQRLSIEII
LGYIRHVFELPMSFFATRRTGEIVSRFTDASKIIDALASTIVSLFLDVSIVIIMGAILVIQNMTLFWITLLSLPIYAVVI
LAFNKSFERLNQKEMESNAILSSAIIEDLHGIETVKALNGETERYQKIDSEFVDYLRKSLAYLKADTLQQALKLFIQLVL
EVVVLWVGANLVIHNQLSVGELMTYNALLAYFVNPLQNIINLQTKLQSAKVANNRLNEVYLVASEFEASRPIHNESQLNG
DIKLQGVSYRYGYGENVLDDVNLTIRQHDKVAIVGMSGSGKSTLVKLLIDFYQPNSGDVILNGFNVKNIDKHTLRTHINY
IPQEPYIFSATIEENLRLGNRSGITEKDIAKACQLALIDTDINKMAMQYQTKLDENGNTLSGGQRQRLTIARALLSPAQV
LIFDESTSGLDAITEKQLIDNLVAMTDKTIIFIAHRLSIAKRTNHIIVLHDGRVAEEGTHAALLNEHGYYYDLINS

Nucleotide

• Length: 2151 bp

>NTDB_id=164692 AVR83_RS03370 WP_003641986.1 687594..689744(-) (comA) [Lactiplantibacillus plantarum strain DF]
ATGCATTGGAGAAACTATGTTGCGCAAGTTGACGAGATGGACTGTGGGGTCGCAGCTTTAGCAATGATTTTGAAAAATTA
TGGTTCGACAACATCATTGGCCTATCTAAGAAATATTGCTAAAACGAGTTTAGAAGGGACTACGGCATTAGGATTAGTAA
AAACGGCCGAAAAGTTAGGTTTTGAAACCAAAGCAATTCAAGCAGATATGAGTCTTTTCGAGGTACAAGATTTACCATTG
CCATTCATTGTGCATGTTACCAAAAATGGGGATCTACAGCATTTTTATGTCGTTGTAAAAACCTCGAAAACGCATGTCGT
GATTGCTGATCCGGACCCAACAGTTGCGGTTATCAGTATGTCAAAGGAACGGTTTGAAAGCGAATGGTCCGGAGTTGCCC
TTTTCTTTGCACCGAAGTCGGAATATAAGCCAGTTAAGCAAGATAAGGGCTCACTATGGGGATTTATTCCAAGCTTATTA
AAGCAGCGCCGACTGGTTATTAATATTGTGCTTGCTGCAGTTTTAATCACGATTATTAGTATCTGTGGGTCTTATTTCTT
ACAAGCGGTGATTGATACTTATATTCCCAATAATATGCACAGTACATTGGCAGTGGTGGCCATTGGTCTAATCGTTTTTT
ATACCTTTCAGGCTATCTTTACTTATGCCCAGAATTTTTTATTGGCGGTTTTAGGTCAACGACTTTCGATTGAAATTATT
TTAGGCTATATTCGGCACGTCTTTGAATTGCCAATGAGTTTTTTTGCCACTCGGCGGACGGGGGAAATTGTTTCGAGGTT
TACGGATGCCAGTAAGATTATTGATGCGTTAGCTAGCACAATTGTTTCGCTGTTTTTAGATGTCAGCATCGTTATTATTA
TGGGGGCAATCTTGGTAATCCAGAATATGACACTTTTTTGGATTACGTTACTCTCGTTGCCAATCTACGCGGTTGTCATC
TTAGCCTTTAATAAATCCTTTGAACGATTGAATCAAAAGGAAATGGAGAGCAATGCTATTTTGAGTTCAGCCATTATTGA
GGATCTTCATGGGATTGAAACTGTTAAGGCGCTGAATGGTGAGACGGAACGTTATCAGAAAATTGATTCAGAATTTGTTG
ATTATCTACGTAAGAGTTTAGCCTATCTTAAAGCGGATACTTTGCAACAGGCATTAAAACTGTTTATACAGTTAGTCTTA
GAAGTTGTTGTTCTATGGGTGGGCGCCAATCTCGTCATTCATAATCAGTTATCAGTTGGGGAGCTCATGACATATAATGC
TTTATTAGCCTATTTTGTTAATCCACTACAGAATATTATTAATTTGCAGACTAAGCTTCAAAGCGCTAAGGTCGCTAACA
ACCGGTTAAATGAAGTGTATTTGGTCGCTAGTGAATTTGAGGCGTCACGGCCAATTCATAATGAAAGTCAATTAAATGGT
GATATTAAGTTACAAGGGGTCAGCTATCGTTATGGTTACGGTGAAAATGTCTTAGATGATGTTAATTTGACGATTCGACA
ACATGATAAGGTTGCAATTGTGGGGATGAGTGGCTCTGGCAAGTCCACGTTAGTTAAATTGCTTATTGATTTTTATCAAC
CAAATAGTGGTGATGTCATATTGAATGGCTTCAACGTTAAGAACATCGATAAGCATACATTGCGGACCCATATTAACTAC
ATCCCGCAGGAACCATACATCTTTTCAGCGACCATTGAAGAAAATTTAAGATTAGGTAATCGCAGCGGTATTACTGAGAA
AGATATTGCGAAGGCTTGCCAATTGGCGTTAATTGATACGGATATTAATAAAATGGCCATGCAATACCAAACTAAGCTAG
ATGAGAATGGTAATACACTATCAGGTGGTCAGCGACAACGATTAACGATTGCGAGAGCGTTATTATCACCCGCTCAAGTC
TTGATATTTGATGAGTCGACGAGTGGACTGGATGCAATTACTGAAAAACAATTAATTGATAATTTAGTGGCAATGACTGA
CAAGACGATTATTTTTATTGCCCACCGGTTGTCGATTGCAAAGCGGACGAATCATATCATCGTTCTGCATGATGGTCGGG
TCGCTGAAGAGGGGACCCATGCGGCATTGTTGAATGAACATGGTTACTATTACGACTTGATCAATAGCTGA

Domains

Predicted by InterproScan.

• Peptidase C39 family (Peptidase_C39) (5-140)

• ABC transporter transmembrane region (ABC_membrane) (166-436)

• ABC transporter (ABC_tran) (498-648)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Streptococcus mitis NCTC 12261	58.906	99.581	0.587
comA	Streptococcus pneumoniae D39	58.626	99.581	0.584
comA	Streptococcus pneumoniae R6	58.626	99.581	0.584
comA	Streptococcus pneumoniae Rx1	58.626	99.581	0.584
comA	Streptococcus pneumoniae TIGR4	58.485	99.581	0.582
comA	Streptococcus mitis SK321	58.345	99.581	0.581
comA	Streptococcus gordonii str. Challis substr. CH1	57.103	100	0.573
comA/nlmT	Streptococcus mutans UA159	54.596	100	0.547