Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RD2015_RS01830 Genome accession   NZ_CP013729
Coordinates   420295..421809 (-) Length   504 a.a.
NCBI ID   WP_058933439.1    Uniprot ID   A0A0U3MBN8
Organism   Roseateles depolymerans strain KCTC 42856     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415295..426809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RD2015_RS26320 (RD2015_368) - 415314..415937 (+) 624 WP_058933434.1 glycine zipper 2TM domain-containing protein -
  RD2015_RS01810 (RD2015_369) - 416189..416608 (+) 420 WP_058933435.1 VOC family protein -
  RD2015_RS01815 (RD2015_370) - 416795..417718 (+) 924 WP_083525242.1 MipA/OmpV family protein -
  RD2015_RS01820 (RD2015_371) - 417729..418415 (+) 687 WP_058933437.1 response regulator transcription factor -
  RD2015_RS01825 (RD2015_372) - 418399..419883 (+) 1485 WP_170156694.1 sensor histidine kinase -
  RD2015_RS25770 - 420073..420339 (+) 267 WP_232309998.1 hypothetical protein -
  RD2015_RS01830 (RD2015_373) comM 420295..421809 (-) 1515 WP_058933439.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RD2015_RS01835 (RD2015_374) - 422078..422410 (+) 333 WP_058933440.1 hypothetical protein -
  RD2015_RS01840 (RD2015_375) - 422619..425087 (-) 2469 WP_058933441.1 hypothetical protein -
  RD2015_RS01845 (RD2015_376) - 425131..426273 (-) 1143 WP_116001696.1 hypothetical protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53689.87 Da        Isoelectric Point: 7.1609

>NTDB_id=164522 RD2015_RS01830 WP_058933439.1 420295..421809(-) (comM) [Roseateles depolymerans strain KCTC 42856]
MSLSVTHSRSLTGLTAAAVDVEVHLANGLPSFTLVGLADTEVKESRERVRAALHSSGLEFPSNKRITVNLSPADLPKEGA
RFDLPIALGLLAASGQVDAQRLPHMECAGELALSGELRPVRGALAMALALRASGLAREMLLPRGSAAEAALMQGLVVREA
AHLLEIVQALQPNSESHLTRVLVTPPLPTLEVHDLRDVKGQAGPKRALEVAAAGGLGLLLVGPPGTGKSMLARRLPGLLP
PLDDTEALASAAVLSINGQFKPEQWGQRPFRSPHHSASAAALIGGGSPPRPGEITLAHHGVLFLDELPEFQRLALEALRE
PLETGRIHIARSCHQAEFPAQFQLIAAMNPCPCGHLGHPTKECRCTPEQIDRYQGRISGPLLDRIDLMVEVPMLPPRVLA
AAPEGETSGTVAERVAAAREAAVLRQGCINAQLPSNQLDEHLHLAPEAEALLHKAAARLAWSGRSYHRVLRMARTVADLA
ASAEVLPVHVSESIQWRRALPGRE

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=164522 RD2015_RS01830 WP_058933439.1 420295..421809(-) (comM) [Roseateles depolymerans strain KCTC 42856]
ATGTCCCTCTCCGTCACTCACAGCCGCTCCCTCACCGGGCTCACTGCCGCCGCAGTGGACGTTGAAGTCCATCTTGCCAA
TGGCCTCCCCAGCTTCACCCTCGTTGGCCTCGCCGACACCGAAGTCAAGGAATCCCGCGAACGCGTCCGCGCCGCGCTGC
ACAGCAGCGGGCTCGAGTTCCCCTCCAACAAACGCATCACAGTCAATCTCTCGCCAGCGGATCTGCCCAAGGAGGGCGCG
CGCTTTGACCTGCCCATTGCGCTGGGTCTCCTGGCCGCGAGCGGACAAGTCGATGCCCAGCGACTGCCCCACATGGAATG
TGCGGGTGAGTTGGCGCTGTCCGGTGAGCTGCGGCCTGTGCGCGGGGCGCTGGCGATGGCCCTGGCGCTGCGGGCCAGCG
GACTGGCGCGTGAAATGCTGCTCCCGCGCGGCAGCGCCGCAGAGGCCGCCTTGATGCAGGGCCTTGTGGTGCGTGAGGCC
GCGCACCTGCTGGAAATCGTCCAGGCCCTGCAACCCAACAGCGAGTCCCATCTGACACGTGTGCTGGTCACGCCGCCGCT
GCCGACGCTGGAGGTGCATGACCTGCGCGATGTCAAAGGCCAGGCCGGGCCCAAGCGCGCGCTCGAAGTGGCGGCCGCGG
GTGGGCTCGGACTGCTGCTGGTCGGCCCTCCCGGCACTGGCAAGTCCATGCTCGCCCGACGCCTTCCGGGGCTGCTGCCG
CCTTTGGACGACACCGAAGCCCTCGCCTCTGCCGCCGTGCTCAGCATCAACGGCCAGTTCAAGCCGGAGCAGTGGGGACA
GCGCCCTTTCAGATCCCCCCACCACAGCGCATCGGCTGCCGCCTTGATCGGCGGCGGATCACCGCCTCGCCCCGGTGAGA
TCACCCTCGCCCATCACGGGGTGCTGTTCCTCGATGAGCTTCCAGAATTCCAGCGTCTGGCGCTTGAAGCGCTGCGGGAG
CCGCTGGAGACGGGCCGCATTCACATCGCGCGCTCGTGCCACCAGGCGGAATTCCCGGCGCAGTTCCAGCTGATTGCCGC
GATGAACCCCTGCCCCTGTGGCCACCTCGGTCATCCGACCAAGGAATGCCGCTGCACGCCCGAGCAGATCGACCGCTACC
AAGGCCGCATCTCCGGCCCCTTGCTGGACCGCATCGACCTGATGGTGGAAGTTCCGATGCTGCCGCCAAGGGTGCTGGCC
GCCGCGCCTGAAGGAGAGACCAGCGGCACGGTCGCCGAACGAGTGGCTGCTGCCCGCGAGGCAGCTGTGCTGCGGCAAGG
CTGCATCAATGCGCAGCTGCCGTCGAACCAGCTGGATGAGCATCTGCACCTCGCGCCCGAGGCGGAGGCACTGCTGCACA
AGGCTGCCGCACGCCTGGCGTGGTCAGGCCGCAGCTACCACCGGGTGCTTCGCATGGCCCGGACGGTGGCTGACCTGGCC
GCAAGTGCCGAGGTGCTGCCGGTGCATGTCTCAGAGTCCATTCAATGGCGCAGGGCATTGCCAGGGCGTGAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3MBN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

48.503

99.405

0.482
  comM Vibrio cholerae strain A1552

48.4

99.206

0.48
  comM Haemophilus influenzae Rd KW20

48.207

99.603

0.48
  comM Legionella pneumophila str. Paris

47.14

100

0.474
  comM Legionella pneumophila strain ERS1305867

47.14

100

0.474
  comM Glaesserella parasuis strain SC1401

47.129

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.278

100

0.403

Multiple sequence alignment