Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RSJ3_RS00955 | Genome accession | NZ_CP013705 |
| Coordinates | 188361..188807 (+) | Length | 148 a.a. |
| NCBI ID | WP_003359348.1 | Uniprot ID | A0A0D1BNS4 |
| Organism | Clostridium botulinum strain F160 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 183361..193807
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RSJ3_RS00925 (RSJ3_176) | - | 183854..185008 (-) | 1155 | WP_012048446.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| RSJ3_RS00930 (RSJ3_177) | - | 185199..185444 (+) | 246 | WP_003361815.1 | DUF3343 domain-containing protein | - |
| RSJ3_RS00935 (RSJ3_178) | - | 185451..186320 (+) | 870 | WP_012048445.1 | mechanosensitive ion channel family protein | - |
| RSJ3_RS00940 (RSJ3_179) | - | 186336..186533 (+) | 198 | WP_075141450.1 | DUF951 domain-containing protein | - |
| RSJ3_RS00945 (RSJ3_180) | - | 186807..187955 (+) | 1149 | WP_003359361.1 | double-cubane-cluster-containing anaerobic reductase | - |
| RSJ3_RS00950 (RSJ3_181) | rpsF | 188061..188345 (+) | 285 | WP_003359427.1 | 30S ribosomal protein S6 | - |
| RSJ3_RS00955 (RSJ3_182) | ssbA | 188361..188807 (+) | 447 | WP_003359348.1 | single-stranded DNA-binding protein | Machinery gene |
| RSJ3_RS00960 (RSJ3_183) | rpsR | 188826..189068 (+) | 243 | WP_003359407.1 | 30S ribosomal protein S18 | - |
| RSJ3_RS00965 (RSJ3_184) | - | 189216..189533 (+) | 318 | WP_003359330.1 | MazG-like family protein | - |
| RSJ3_RS00970 (RSJ3_185) | - | 189545..190549 (+) | 1005 | WP_045541137.1 | YybS family protein | - |
| RSJ3_RS00975 (RSJ3_186) | - | 190550..192535 (+) | 1986 | WP_003397329.1 | DHH family phosphoesterase | - |
| RSJ3_RS00980 (RSJ3_187) | rplI | 192535..192978 (+) | 444 | WP_003359455.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16325.15 Da Isoelectric Point: 4.7821
>NTDB_id=164205 RSJ3_RS00955 WP_003359348.1 188361..188807(+) (ssbA) [Clostridium botulinum strain F160]
MNKVVLIGRLTKDPELKFTPGNGTAVATFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTRRYVTEVIAEEVKFLEWGNKPTTDSTYNNGSEPSYQSGQGFGNGNSFDDDIIPVDDGDIPF
MNKVVLIGRLTKDPELKFTPGNGTAVATFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTRRYVTEVIAEEVKFLEWGNKPTTDSTYNNGSEPSYQSGQGFGNGNSFDDDIIPVDDGDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=164205 RSJ3_RS00955 WP_003359348.1 188361..188807(+) (ssbA) [Clostridium botulinum strain F160]
ATGAATAAAGTTGTTTTGATAGGTAGATTAACCAAAGATCCTGAGTTAAAATTTACTCCAGGAAACGGGACAGCAGTTGC
CACCTTTACTTTGGCTGTAGATAGAAGATTTTCAAAAGATGGTCAGAGAGAAGCAGATTTCATCCCTATAGTAGTATGGG
GAAAACAAGCAGAATCTACAGCTAACTACATGAGTAAAGGAAAACTTATGGGGGTTAGTGGTAGAATTCAAACAAGAAGC
TATGAAGCTAAAGATGGTACAAGAAGATATGTAACAGAAGTCATAGCTGAAGAAGTTAAATTTCTTGAGTGGGGCAATAA
GCCTACAACGGATTCAACATATAATAATGGGTCAGAACCAAGTTATCAATCAGGCCAAGGCTTTGGAAATGGAAACAGTT
TTGACGACGATATAATTCCAGTGGATGATGGAGACATCCCATTTTAA
ATGAATAAAGTTGTTTTGATAGGTAGATTAACCAAAGATCCTGAGTTAAAATTTACTCCAGGAAACGGGACAGCAGTTGC
CACCTTTACTTTGGCTGTAGATAGAAGATTTTCAAAAGATGGTCAGAGAGAAGCAGATTTCATCCCTATAGTAGTATGGG
GAAAACAAGCAGAATCTACAGCTAACTACATGAGTAAAGGAAAACTTATGGGGGTTAGTGGTAGAATTCAAACAAGAAGC
TATGAAGCTAAAGATGGTACAAGAAGATATGTAACAGAAGTCATAGCTGAAGAAGTTAAATTTCTTGAGTGGGGCAATAA
GCCTACAACGGATTCAACATATAATAATGGGTCAGAACCAAGTTATCAATCAGGCCAAGGCTTTGGAAATGGAAACAGTT
TTGACGACGATATAATTCCAGTGGATGATGGAGACATCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.837 |
100 |
0.568 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.269 |
90.541 |
0.419 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.392 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.34 |
69.595 |
0.385 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.398 |
69.595 |
0.372 |