Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RSJ11_RS20740 Genome accession   NZ_CP013701
Coordinates   4034292..4034738 (-) Length   148 a.a.
NCBI ID   WP_003359348.1    Uniprot ID   A0A0D1BNS4
Organism   Clostridium sporogenes strain AM1195     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4029292..4039738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSJ11_RS20715 (RSJ11_20610) rplI 4030117..4030560 (-) 444 WP_003359455.1 50S ribosomal protein L9 -
  RSJ11_RS20720 (RSJ11_20615) - 4030560..4032545 (-) 1986 WP_030032654.1 DHH family phosphoesterase -
  RSJ11_RS20725 (RSJ11_20620) - 4032546..4033553 (-) 1008 WP_061328431.1 YybS family protein -
  RSJ11_RS20730 (RSJ11_20625) - 4033565..4033882 (-) 318 WP_003488082.1 MazG-like family protein -
  RSJ11_RS20735 (RSJ11_20630) rpsR 4034031..4034273 (-) 243 WP_003488080.1 30S ribosomal protein S18 -
  RSJ11_RS20740 (RSJ11_20635) ssbA 4034292..4034738 (-) 447 WP_003359348.1 single-stranded DNA-binding protein Machinery gene
  RSJ11_RS20745 (RSJ11_20640) rpsF 4034754..4035038 (-) 285 WP_003488078.1 30S ribosomal protein S6 -
  RSJ11_RS20750 (RSJ11_20645) - 4035144..4036292 (-) 1149 WP_061328432.1 double-cubane-cluster-containing anaerobic reductase -
  RSJ11_RS20755 (RSJ11_20650) - 4036329..4037477 (-) 1149 WP_061328433.1 double-cubane-cluster-containing anaerobic reductase -
  RSJ11_RS20760 (RSJ11_20655) - 4037798..4037995 (-) 198 WP_003397342.1 DUF951 domain-containing protein -
  RSJ11_RS20765 (RSJ11_20660) - 4038011..4038880 (-) 870 WP_061328434.1 mechanosensitive ion channel family protein -
  RSJ11_RS20770 (RSJ11_20665) - 4038887..4039132 (-) 246 WP_061328435.1 DUF3343 domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16325.15 Da        Isoelectric Point: 4.7821

>NTDB_id=164177 RSJ11_RS20740 WP_003359348.1 4034292..4034738(-) (ssbA) [Clostridium sporogenes strain AM1195]
MNKVVLIGRLTKDPELKFTPGNGTAVATFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTRRYVTEVIAEEVKFLEWGNKPTTDSTYNNGSEPSYQSGQGFGNGNSFDDDIIPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=164177 RSJ11_RS20740 WP_003359348.1 4034292..4034738(-) (ssbA) [Clostridium sporogenes strain AM1195]
TTGAATAAAGTTGTTTTAATAGGTAGATTAACCAAGGATCCGGAGTTAAAATTTACTCCAGGAAATGGGACAGCAGTTGC
CACCTTTACTTTGGCTGTAGATAGAAGATTTTCAAAAGATGGCCAGAGAGAAGCAGATTTCATCCCTATAGTAGTATGGG
GAAAACAAGCAGAATCTACAGCTAATTATATGAGTAAAGGAAAACTTATGGGTGTTAGTGGTAGAATTCAAACAAGAAGC
TATGAAGCTAAAGATGGTACAAGAAGATATGTAACAGAAGTCATAGCTGAAGAAGTTAAATTTCTTGAGTGGGGCAATAA
GCCTACAACGGATTCAACATATAATAATGGGTCAGAACCAAGTTATCAATCAGGCCAAGGCTTTGGAAATGGAAACAGTT
TTGACGACGATATAATTCCAGTGGATGATGGAGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1BNS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.837

100

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

46.269

90.541

0.419
  ssb Neisseria meningitidis MC58

33.526

100

0.392
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.34

69.595

0.385
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.398

69.595

0.372

Multiple sequence alignment