Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AT746_RS01140 Genome accession   NZ_CP013650
Coordinates   224652..225221 (-) Length   189 a.a.
NCBI ID   WP_062475260.1    Uniprot ID   -
Organism   Lacimicrobium alkaliphilum strain YelD216     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 219652..230221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT746_RS01115 (AT746_01115) - 220090..221013 (-) 924 WP_062475245.1 hypothetical protein -
  AT746_RS01120 (AT746_01120) - 221226..221615 (+) 390 WP_062475247.1 STAS/SEC14 domain-containing protein -
  AT746_RS01125 (AT746_01125) - 221751..222371 (-) 621 WP_062475251.1 glutathione S-transferase family protein -
  AT746_RS01130 (AT746_01130) - 222527..223483 (+) 957 WP_062475254.1 helix-turn-helix transcriptional regulator -
  AT746_RS01135 (AT746_01135) - 223498..224298 (-) 801 WP_062475257.1 hypothetical protein -
  AT746_RS01140 (AT746_01140) ssb 224652..225221 (-) 570 WP_062475260.1 single-stranded DNA-binding protein Machinery gene
  AT746_RS01145 (AT746_01145) - 225285..226634 (-) 1350 WP_062475263.1 MFS transporter -
  AT746_RS01150 (AT746_01150) uvrA 226851..229697 (+) 2847 WP_062475266.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20614.74 Da        Isoelectric Point: 4.9367

>NTDB_id=163362 AT746_RS01140 WP_062475260.1 224652..225221(-) (ssb) [Lacimicrobium alkaliphilum strain YelD216]
MASRGINKVILVGNLGQDPEVRYTANGKAVANLSLATSESWKDQSGQIQEKTEWHRVVLFGKLAEIAGEYLRKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIVLDPFNGVMQMLGGGAGGGAGTGAPRGNAPANNFNQAPQQQPAQQQPQYQQYPNQGGGQ
GQPKPQQQPQNQPGSMPEPDFDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=163362 AT746_RS01140 WP_062475260.1 224652..225221(-) (ssb) [Lacimicrobium alkaliphilum strain YelD216]
ATGGCAAGCAGAGGCATCAATAAAGTTATCCTGGTAGGCAACCTGGGCCAGGATCCGGAAGTACGTTACACCGCAAACGG
TAAGGCGGTGGCCAACCTGAGTCTTGCCACCTCTGAAAGCTGGAAAGATCAGAGCGGCCAGATTCAGGAAAAAACCGAGT
GGCACAGAGTTGTGTTGTTTGGCAAGCTGGCTGAAATTGCCGGCGAGTATCTGCGCAAAGGCAGCCAAATCTATGTGGAA
GGCAAACTGCAAACCCGCAAGTGGCAGGATCAGCAGGGCCAGGACAAATACACCACAGAAATTGTACTGGATCCCTTTAA
TGGCGTGATGCAGATGTTAGGTGGTGGCGCAGGCGGCGGTGCCGGAACGGGTGCCCCAAGAGGCAATGCCCCGGCCAATA
ACTTTAACCAGGCACCACAGCAACAACCGGCGCAACAACAGCCCCAGTATCAGCAATACCCTAATCAGGGCGGCGGTCAG
GGTCAGCCGAAACCTCAGCAACAACCACAGAATCAGCCGGGCTCAATGCCGGAGCCGGACTTTGATTTTGATGATGATAT
CCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.639

100

0.593
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.524
  ssb Neisseria gonorrhoeae MS11

42.935

97.354

0.418
  ssb Neisseria meningitidis MC58

42.391

97.354

0.413

Multiple sequence alignment