Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AT705_RS13915 Genome accession   NZ_CP013611
Coordinates   3194148..3194843 (+) Length   231 a.a.
NCBI ID   WP_058797025.1    Uniprot ID   A0A0U3HLT9
Organism   Pseudoalteromonas rubra strain SCSIO 6842     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3189148..3199843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT705_RS13905 (AT705_13905) - 3191903..3192655 (+) 753 WP_058797023.1 substrate-binding periplasmic protein -
  AT705_RS13910 (AT705_13910) - 3192753..3194120 (+) 1368 WP_058797024.1 MFS transporter -
  AT705_RS13915 (AT705_13915) ssb 3194148..3194843 (+) 696 WP_058797025.1 single-stranded DNA-binding protein Machinery gene
  AT705_RS13920 (AT705_13920) - 3194944..3196182 (-) 1239 WP_058797026.1 serine hydrolase domain-containing protein -
  AT705_RS13925 (AT705_13925) - 3196205..3196939 (-) 735 WP_058797027.1 hypothetical protein -
  AT705_RS13930 (AT705_13930) - 3196936..3197286 (-) 351 WP_058797028.1 PadR family transcriptional regulator -
  AT705_RS13935 (AT705_13935) - 3197631..3199268 (+) 1638 WP_058797029.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24671.67 Da        Isoelectric Point: 5.2145

>NTDB_id=163218 AT705_RS13915 WP_058797025.1 3194148..3194843(+) (ssb) [Pseudoalteromonas rubra strain SCSIO 6842]
MARGVNKVILVGNLGQDPEVRYMPNGNGVANISIATTDSWKDKNTGQMQERTEWHRVVLFGKLAEVAGEYLRKGSQVYIE
GRLQTRKWTDQGGQERYTTEIVVDMGGQMQMLGGRGEQSGGQYQGGQQGGQNYGQSNYGNNANQGGQSQYGQQQQGGFAP
QQSQQPQHNQQQSGGFGGGQSMGQQPQHNAPAQGGFAPQQGNAGGSASSNASGSASNPMEPPIDFDDDIPF

Nucleotide


Download         Length: 696 bp        

>NTDB_id=163218 AT705_RS13915 WP_058797025.1 3194148..3194843(+) (ssb) [Pseudoalteromonas rubra strain SCSIO 6842]
ATGGCACGCGGTGTAAACAAAGTTATTTTGGTTGGTAATTTAGGCCAAGATCCTGAAGTACGTTATATGCCTAACGGAAA
CGGCGTAGCGAACATCAGTATTGCAACGACCGACAGTTGGAAAGACAAAAACACAGGTCAGATGCAAGAGCGCACTGAAT
GGCATCGTGTTGTGCTATTCGGTAAGCTGGCAGAGGTAGCAGGTGAGTACCTGCGTAAAGGCTCACAAGTCTATATTGAA
GGTCGCTTACAGACGCGTAAGTGGACAGATCAAGGTGGTCAGGAACGTTACACCACAGAGATCGTTGTTGATATGGGTGG
TCAGATGCAAATGTTGGGCGGCCGCGGTGAACAAAGTGGCGGCCAGTACCAGGGTGGTCAACAGGGCGGCCAAAACTATG
GCCAGTCCAACTATGGCAATAATGCGAATCAGGGCGGTCAGTCTCAGTACGGACAACAGCAACAAGGTGGATTCGCGCCT
CAGCAGTCTCAACAGCCTCAGCATAATCAACAGCAAAGCGGTGGGTTTGGCGGTGGTCAGTCAATGGGACAGCAACCGCA
GCATAATGCGCCTGCTCAAGGTGGGTTTGCCCCTCAGCAAGGTAATGCAGGTGGCAGTGCCAGCAGCAATGCAAGTGGTA
GCGCTAGTAACCCAATGGAACCGCCCATTGACTTTGATGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3HLT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.649

100

0.506
  ssb Glaesserella parasuis strain SC1401

46.32

100

0.463
  ssb Neisseria meningitidis MC58

40.351

98.701

0.398
  ssb Neisseria gonorrhoeae MS11

40.351

98.701

0.398

Multiple sequence alignment