Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AT395_RS22600 Genome accession   NZ_CP013481
Coordinates   4999810..5001363 (+) Length   517 a.a.
NCBI ID   WP_048628588.1    Uniprot ID   -
Organism   Pandoraea apista strain DSM 16535     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4994810..5006363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT395_RS22580 (AT395_13485) amt 4996108..4997646 (-) 1539 WP_042114242.1 ammonium transporter -
  AT395_RS22585 (AT395_13490) - 4997672..4998010 (-) 339 WP_010804740.1 P-II family nitrogen regulator -
  AT395_RS22590 (AT395_13495) - 4998024..4998872 (-) 849 WP_042114241.1 TorF family putative porin -
  AT395_RS22595 (AT395_13500) - 4999268..4999516 (+) 249 WP_042114239.1 accessory factor UbiK family protein -
  AT395_RS22600 (AT395_13505) comM 4999810..5001363 (+) 1554 WP_048628588.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AT395_RS22605 (AT395_13510) - 5001369..5001908 (-) 540 WP_042114235.1 hypothetical protein -
  AT395_RS26195 - 5002128..5002748 (+) 621 WP_224787342.1 thioredoxin -
  AT395_RS22615 (AT395_13520) - 5002805..5003329 (+) 525 WP_042114234.1 TlpA disulfide reductase family protein -
  AT395_RS22620 (AT395_13525) - 5003594..5004946 (-) 1353 WP_042117781.1 sigma-54-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54248.94 Da        Isoelectric Point: 8.3691

>NTDB_id=162963 AT395_RS22600 WP_048628588.1 4999810..5001363(+) (comM) [Pandoraea apista strain DSM 16535]
MSLAVVSSRAITGMAARAVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRAVRGGLAMASAMAAEPSARALVLPAGSAQEAALVEDATVYGAR
TLLDVCAHLAAPDVATPLPRAVVANACAASASYGPTGTRGTDFPVMGDMSDVKGQAHAKRALEVAAAGGHHLLFYGPPGT
GKSMLATRLVGLLPALSKAQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASSAALVGGGSAPRPGEISLAHRGVLFLD
ELPEFQRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRSCRCTSDAVARYRGRLSGPLLDRI
DLHVEVPALSAETFAAPAGGERSEVVALRVRQARERQLSRQGQLNCGLSGSALETQCALRPDAREVLHRAVTQHHWSART
YHRVLRVARTVADIAGCESIDAHHVGEAVQYREAPPS

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=162963 AT395_RS22600 WP_048628588.1 4999810..5001363(+) (comM) [Pandoraea apista strain DSM 16535]
ATGTCATTGGCAGTTGTCAGCAGCCGGGCGATCACGGGAATGGCGGCGCGCGCGGTTACCGTGGAGGTGCATCTGGCCAA
CGGGCTGCCGGGCCTGTCGCTGGTCGGTCTGCCCGATACCGAGGTCAAGGAAAGCCGTGAGCGCGTGCGTTCGGCATTAC
AGAACAGCCGGTTCGAATTCCCCGCGCGGCGCATCACCGTCAATCTGGCCCCGGCCGATTTACCGAAGGCGTCCGGTTGC
TTCGATCTGCCGATTGCACTGGGCATTCTCGCGGCCAGCGGTCAGTTGCCCGAGGCCGGACTGCGCACGCATGAATTTGC
GGGCGAGTTATCGCTCACAGGGGAACTGCGCGCCGTGCGCGGTGGCCTTGCCATGGCGAGCGCCATGGCGGCCGAACCCT
CGGCGCGTGCGCTGGTGCTGCCCGCCGGCAGTGCGCAGGAAGCGGCGCTCGTCGAAGACGCCACGGTCTACGGCGCGCGC
ACGTTGCTCGACGTCTGCGCGCATCTTGCAGCGCCCGACGTCGCAACACCGCTACCACGTGCCGTCGTGGCCAATGCGTG
TGCGGCGTCGGCAAGCTACGGCCCTACGGGCACACGCGGCACCGACTTTCCCGTTATGGGGGACATGAGCGATGTCAAAG
GACAGGCGCACGCCAAACGCGCACTGGAAGTTGCGGCGGCGGGTGGGCACCACCTCCTTTTCTACGGGCCGCCGGGTACA
GGCAAATCGATGCTGGCAACGCGGCTTGTCGGGCTGCTCCCCGCGTTGAGCAAGGCACAGGCCGTCGAGGCTGCCACGCT
GGCCAGTCTGAGTGCGCAGGGCTTCGATATGCGGCATTGGGGCCGGCGACCGTTTCGCGCGCCGCATCACACGGCATCGT
CAGCGGCATTGGTAGGCGGCGGGAGTGCGCCACGCCCCGGCGAAATCAGCCTTGCGCATCGTGGCGTGCTATTTCTCGAT
GAACTGCCCGAATTCCAGCGGCGTGTGCTTGAAGTCCTGCGCGAACCATTGGAACTGGGTCATGTGACGATCTCGCGTGC
AGGGGGTCATGCAACGTTTCCCGCCGCCTTTCAACTCGTGGCCGCCATGAACCCGTGCCCGTGCGGCGATCTCGGACATC
CCTCGCGAAGTTGCCGTTGTACGAGTGATGCGGTGGCGCGCTATCGCGGCCGCCTCTCAGGACCGTTGCTCGACCGTATC
GACTTGCATGTAGAGGTGCCGGCACTGAGCGCCGAGACGTTCGCTGCACCGGCCGGTGGCGAGCGCAGCGAAGTCGTAGC
GCTGCGTGTCAGGCAAGCGAGGGAGCGTCAGCTTTCGCGGCAGGGGCAATTGAACTGCGGCCTGTCAGGCAGCGCACTGG
AAACACAATGCGCGTTACGGCCGGACGCTCGTGAGGTGCTGCATCGGGCCGTGACGCAGCACCATTGGTCCGCACGCACC
TATCACCGTGTCTTGCGCGTGGCGCGCACGGTCGCCGATATTGCGGGTTGTGAATCGATTGACGCTCACCACGTCGGCGA
GGCCGTGCAATATCGAGAAGCACCGCCGTCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(208-412)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.874

99.613

0.507
  comM Vibrio campbellii strain DS40M4

50.096

100

0.503
  comM Haemophilus influenzae Rd KW20

49.708

99.226

0.493
  comM Glaesserella parasuis strain SC1401

49.416

99.42

0.491
  comM Legionella pneumophila str. Paris

47.49

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.49

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.605

99.807

0.435

Multiple sequence alignment