Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AT395_RS22010 Genome accession   NZ_CP013481
Coordinates   4879566..4880072 (-) Length   168 a.a.
NCBI ID   WP_048628624.1    Uniprot ID   A0A0G4JG45
Organism   Pandoraea apista strain DSM 16535     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4874566..4885072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT395_RS21990 (AT395_12900) - 4874928..4876382 (-) 1455 WP_042114368.1 2-hydroxymuconic semialdehyde dehydrogenase -
  AT395_RS21995 (AT395_12905) - 4876671..4877408 (+) 738 WP_048628626.1 GntR family transcriptional regulator -
  AT395_RS22000 (AT395_12910) - 4877430..4878596 (-) 1167 WP_048628625.1 M20 aminoacylase family protein -
  AT395_RS22005 (AT395_12915) - 4878700..4879431 (-) 732 WP_082164741.1 HD domain-containing protein -
  AT395_RS22010 (AT395_12920) ssb 4879566..4880072 (-) 507 WP_048628624.1 single-stranded DNA-binding protein Machinery gene
  AT395_RS22015 (AT395_12925) - 4880103..4881326 (-) 1224 WP_042114362.1 MFS transporter -
  AT395_RS22020 (AT395_12930) uvrA 4881749..4884613 (+) 2865 WP_042114361.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17655.36 Da        Isoelectric Point: 5.3177

>NTDB_id=162961 AT395_RS22010 WP_048628624.1 4879566..4880072(-) (ssb) [Pandoraea apista strain DSM 16535]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTDRYSTEIVADQMQMLGGRGGEGGGGGGGGYSRGGGGGDEGGGGGGYSRGGGAGRQQAPAKQSGGGFD
DMDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=162961 AT395_RS22010 WP_048628624.1 4879566..4880072(-) (ssb) [Pandoraea apista strain DSM 16535]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGTAACCTTGGCGCCGACCCCGAAGTCCGCTATTTGCCAAGCGGCGATGC
GGTCGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAATCCGGCGAGTTCAAGGAAATGACGGAATGGC
ACCGCGTGTCGTTCTTCGGCCGTCTCGCCGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGC
CGTATCCGCACGCGCAAGTATCAGGCGCAGGACGGCACGGACCGTTACAGCACGGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGTGGCCGTGGCGGTGAAGGTGGCGGCGGCGGTGGCGGTGGCTACTCGCGCGGCGGCGGTGGTGGTGACGAAGGCG
GCGGCGGTGGCGGCTATTCGCGAGGCGGTGGCGCTGGCCGCCAGCAAGCGCCGGCCAAGCAATCGGGCGGCGGCTTCGAC
GACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G4JG45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.247

100

0.554
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.524
  ssb Neisseria gonorrhoeae MS11

43.956

100

0.476
  ssb Neisseria meningitidis MC58

43.956

100

0.476
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.955

100

0.381

Multiple sequence alignment