Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WS71_RS33125 Genome accession   NZ_CP013389
Coordinates   4048954..4050522 (+) Length   522 a.a.
NCBI ID   WP_066495525.1    Uniprot ID   A0A1B4G647
Organism   Burkholderia mayonis strain BDU8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4043954..4055522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS71_RS33105 (WS71_30350) gshA 4044717..4046006 (-) 1290 WP_066495524.1 glutamate--cysteine ligase -
  WS71_RS33110 (WS71_30355) - 4046326..4047822 (-) 1497 WP_162499476.1 ammonium transporter -
  WS71_RS33115 (WS71_30360) - 4047855..4048193 (-) 339 WP_004198020.1 P-II family nitrogen regulator -
  WS71_RS33120 (WS71_30365) - 4048562..4048813 (+) 252 WP_010101376.1 accessory factor UbiK family protein -
  WS71_RS33125 (WS71_30370) comM 4048954..4050522 (+) 1569 WP_066495525.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WS71_RS33130 (WS71_30375) - 4050699..4051142 (-) 444 WP_066495533.1 GNAT family N-acetyltransferase -
  WS71_RS33135 (WS71_30380) - 4051559..4052395 (+) 837 WP_066495536.1 thioesterase II family protein -
  WS71_RS33140 (WS71_30385) - 4052999..4053745 (-) 747 WP_108027123.1 hypothetical protein -
  WS71_RS33145 (WS71_30390) - 4053911..4054447 (+) 537 WP_066495538.1 peroxiredoxin family protein -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 54955.79 Da        Isoelectric Point: 6.9361

>NTDB_id=162437 WS71_RS33125 WP_066495525.1 4048954..4050522(+) (comM) [Burkholderia mayonis strain BDU8]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPADALDGREFAGELSLTGALRPMRGAFAMACGAARGQQADESGSAESAPLPAAAPELYLPLPSA
GEAALVPGVTVYGAADLPALCAHLADAPDGRLAPVAAPRLDDLPATSAPDLADVIGQTGAKRALEVAAAGGHHMLMIGPP
GAGKSMLAARLPGLLPPLTDDEALTSAAILSSSRAGFAPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLAHFGVLF
LDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKLSGPLLD
RIDIQIEIPALTPAELAERPATAGESSATVAERVARARERQFARQCKTNHMLTGRETDALCRPDGTGEALLREAGERFRW
SARAYYRVLKVTRTIADLAGDDAPSAGQIAEAIRYRRVFSPV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=162437 WS71_RS33125 WP_066495525.1 4048954..4050522(+) (comM) [Burkholderia mayonis strain BDU8]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTGCCGGCCGCGCGCCGGAAGTCACCGTCGAAGTCCACCTCGCCAA
CGGGTTACCGTCGTTCTCGATCGTCGGCCTGCCCGATCTCGAAGTCCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGCTTCGAATTCCCTGTGCGGCGGATCACCGTCAACCTCGCCCCCGCCGACCTGCCGAAGGAGTCCGGGCGC
TTCGATCTGCCGATCGCGCTCGGCATCCTCGCGGCAAGCGGCCAACTTCCGGCGGACGCGCTCGACGGCCGCGAGTTCGC
GGGCGAGCTGTCGTTGACGGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCGTGCGGCGCCGCGCGCGGGCAGC
AGGCGGACGAAAGCGGTTCGGCCGAGTCCGCGCCTTTGCCCGCCGCCGCACCCGAGCTCTATCTGCCGCTGCCGAGCGCA
GGCGAAGCGGCGCTCGTGCCGGGCGTGACTGTGTACGGCGCGGCCGACCTGCCCGCGTTGTGCGCGCATCTCGCCGACGC
GCCGGACGGGCGGCTCGCGCCGGTCGCTGCGCCCCGCCTCGACGATCTGCCCGCCACGTCCGCGCCCGACCTCGCCGACG
TGATCGGCCAGACGGGCGCGAAGCGCGCGCTCGAAGTCGCGGCGGCGGGCGGCCATCACATGCTGATGATCGGGCCGCCG
GGCGCGGGCAAGTCGATGCTCGCCGCGCGCCTGCCGGGCCTCTTGCCGCCGCTCACCGACGACGAGGCGCTGACGTCGGC
CGCGATCCTGTCGTCGAGCCGCGCGGGCTTCGCGCCCGCTCAATGGCGGCGGCGACCGTTTCGCGCGCCGCATCACTCGT
CGAGCTCGGCCGCGCTCGTCGGCGGCCGCAATCCGCCGCAGCCCGGCGAAATCACGCTTGCGCACTTCGGCGTGCTGTTT
CTCGACGAGCTGCCCGAGTTCGACCGGCACGTGCTCGAGACGCTACGCGAGCCGCTCGAAGCGGGCCGCATCACGATCTC
GCGCGCCGCGCTGCAAGCCGATTTCCCGGCCGCGTGCCAGTTGATCGCCGCGATGAATCCGTGCCCGTGCGGCTGGCGCG
GCGATCCCGGCGGCCGCTGCCGCTGCTCGCCCGACATCGCCGCGCGCTATCTGCGCAAGCTGTCCGGGCCGCTCCTCGAC
CGGATCGACATCCAGATCGAGATCCCGGCGCTCACACCCGCCGAACTCGCCGAACGGCCGGCGACGGCGGGCGAATCGAG
CGCGACCGTCGCCGAACGCGTCGCCCGTGCGCGCGAGCGGCAATTCGCACGGCAATGCAAGACGAACCACATGCTGACGG
GCCGCGAAACCGACGCGCTCTGCCGCCCGGACGGCACGGGCGAAGCATTGTTGCGCGAGGCGGGCGAGCGGTTCCGCTGG
TCGGCGCGCGCGTACTACCGGGTGCTGAAGGTCACGCGGACGATCGCGGATCTGGCGGGCGACGACGCGCCGAGCGCGGG
GCAGATCGCCGAGGCGATCCGTTATCGGCGGGTGTTTTCGCCGGTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(424-516)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(210-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4G647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.837

98.851

0.483
  comM Vibrio campbellii strain DS40M4

48.45

98.851

0.479
  comM Haemophilus influenzae Rd KW20

47.582

99.042

0.471
  comM Glaesserella parasuis strain SC1401

46.705

98.851

0.462
  comM Legionella pneumophila str. Paris

46.435

99.425

0.462
  comM Legionella pneumophila strain ERS1305867

46.435

99.425

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.08

98.276

0.423

Multiple sequence alignment