Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WS70_RS16590 Genome accession   NZ_CP013386
Coordinates   3445757..3447325 (+) Length   522 a.a.
NCBI ID   WP_059471840.1    Uniprot ID   -
Organism   Burkholderia mayonis strain BDU6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3440757..3452325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS70_RS16570 (WS70_15265) gshA 3441515..3442804 (-) 1290 WP_059471837.1 glutamate--cysteine ligase -
  WS70_RS16575 (WS70_15270) - 3443123..3444625 (-) 1503 WP_059596795.1 ammonium transporter -
  WS70_RS16580 (WS70_15275) - 3444658..3444996 (-) 339 WP_004198020.1 P-II family nitrogen regulator -
  WS70_RS16585 (WS70_15280) - 3445365..3445616 (+) 252 WP_059471839.1 accessory factor UbiK family protein -
  WS70_RS16590 (WS70_15285) comM 3445757..3447325 (+) 1569 WP_059471840.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WS70_RS31620 - 3447298..3447699 (-) 402 WP_159082911.1 hypothetical protein -
  WS70_RS16600 (WS70_15295) - 3447707..3448150 (-) 444 WP_059596797.1 GNAT family N-acetyltransferase -
  WS70_RS16605 (WS70_15300) - 3448591..3449403 (+) 813 WP_059596798.1 thioesterase II family protein -
  WS70_RS16610 (WS70_15305) - 3450008..3450745 (-) 738 WP_108033961.1 hypothetical protein -
  WS70_RS16615 (WS70_15310) - 3450911..3451447 (+) 537 WP_059471845.1 peroxiredoxin family protein -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 54905.76 Da        Isoelectric Point: 7.6218

>NTDB_id=162421 WS70_RS16590 WP_059471840.1 3445757..3447325(+) (comM) [Burkholderia mayonis strain BDU6]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPANALDGREFAGELSLTGALRPMRGAFAMACGAARGQQADESGSAESAPLPAAAPELYLPLPSA
GEAALVPGVTVYGAADLPALCAHLADAPGGRLAPVAAPRLDDLPATSAPDLADVIGQTGAKRALEVAAAGGHHMLMIGPP
GAGKSMLAARLPGLLPPLTDDEALTSAAILSSSRAGFAPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLAHFGVLF
LDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCSPDVAARYLRKLSGPLLD
RIDIQIEIPALTPAELAERPATAGESSATVAERVARARERQFARQRKTNHMLTGRETDALCRPDGTGEALLREAGERFRW
SARAYYRVLKVARTIADLAGDDAPSAGQIAEAIRYRRVFSPV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=162421 WS70_RS16590 WP_059471840.1 3445757..3447325(+) (comM) [Burkholderia mayonis strain BDU6]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTGCCGGCCGCGCGCCGGAAGTCACCGTCGAAGTCCATCTCGCCAA
CGGGTTGCCGTCGTTCTCGATCGTCGGCCTGCCCGATCTCGAAGTCCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGCTTCGAGTTCCCCGTGCGGCGCATCACCGTCAACCTCGCCCCCGCCGACCTGCCGAAGGAGTCCGGACGC
TTCGATCTGCCGATCGCGCTCGGCATCCTCGCGGCAAGCGGCCAGCTTCCGGCGAACGCGCTCGACGGCCGCGAGTTCGC
GGGCGAGCTGTCGTTGACGGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCGTGCGGCGCCGCGCGCGGGCAGC
AGGCGGACGAAAGCGGTTCGGCCGAGTCCGCGCCGTTACCCGCCGCCGCACCCGAGCTCTATCTGCCGCTGCCGAGCGCA
GGCGAAGCGGCGCTCGTGCCGGGCGTGACCGTGTACGGCGCGGCCGACCTGCCCGCGTTGTGCGCGCATCTCGCCGACGC
GCCGGGCGGGCGGCTCGCGCCGGTCGCCGCCCCGCGCCTCGACGATCTGCCCGCCACGTCCGCCCCCGACCTCGCCGACG
TGATCGGCCAGACGGGCGCGAAGCGCGCGCTCGAAGTCGCGGCGGCGGGCGGCCATCACATGCTGATGATCGGGCCGCCG
GGCGCGGGCAAGTCGATGCTCGCCGCGCGCCTGCCTGGCCTCTTGCCGCCGCTCACCGATGACGAGGCGCTGACGTCGGC
CGCGATCCTGTCGTCGAGCCGCGCGGGCTTCGCGCCCGCTCAATGGCGGCGGCGGCCGTTTCGCGCGCCGCATCATTCGT
CGAGCTCGGCCGCGCTCGTCGGCGGCCGCAATCCGCCGCAGCCCGGCGAAATCACGCTTGCGCACTTCGGCGTGCTGTTT
CTCGATGAGCTCCCTGAATTCGACCGGCACGTGCTCGAGACGCTGCGCGAGCCGCTCGAAGCGGGTCGCATCACGATCTC
GCGCGCCGCGCTGCAAGCCGATTTCCCGGCCGCGTGCCAGTTGATCGCCGCGATGAATCCGTGCCCGTGCGGCTGGCGCG
GCGATCCCGGCGGCCGCTGCCGCTGCTCGCCCGACGTCGCCGCGCGCTATCTGCGCAAGCTGTCCGGGCCGCTTCTCGAC
CGGATCGACATCCAGATCGAGATCCCGGCGCTCACCCCCGCCGAACTCGCCGAGCGGCCGGCGACGGCGGGCGAATCGAG
CGCGACCGTCGCCGAACGCGTCGCCCGTGCGCGCGAGCGACAATTCGCGCGGCAACGCAAGACGAACCACATGCTGACGG
GCCGCGAAACCGACGCGCTCTGCCGCCCGGACGGCACGGGCGAAGCGCTGTTGCGCGAGGCGGGCGAGCGGTTCCGCTGG
TCGGCGCGCGCGTACTACCGGGTGCTGAAGGTCGCGCGAACGATCGCGGATCTGGCAGGCGACGACGCGCCGAGCGCGGG
ACAGATCGCCGAAGCGATCCGTTATCGGCGGGTGTTTTCACCGGTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(424-516)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(210-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.225

98.851

0.487
  comM Vibrio campbellii strain DS40M4

48.45

98.851

0.479
  comM Haemophilus influenzae Rd KW20

47.5

99.617

0.473
  comM Legionella pneumophila str. Paris

46.435

99.425

0.462
  comM Legionella pneumophila strain ERS1305867

46.435

99.425

0.462
  comM Glaesserella parasuis strain SC1401

46.512

98.851

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.08

98.276

0.423

Multiple sequence alignment