Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WI26_RS13400 Genome accession   NZ_CP013362
Coordinates   2909586..2910137 (-) Length   183 a.a.
NCBI ID   WP_069226162.1    Uniprot ID   -
Organism   Burkholderia diffusa strain RF2-non-BP9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2904586..2915137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WI26_RS13375 (WI26_13365) - 2904612..2904812 (-) 201 WP_069226159.1 hypothetical protein -
  WI26_RS13380 (WI26_13370) phbB 2905010..2905753 (-) 744 WP_059465803.1 acetoacetyl-CoA reductase -
  WI26_RS13385 (WI26_13375) - 2905969..2907150 (-) 1182 WP_069226423.1 acetyl-CoA C-acetyltransferase -
  WI26_RS13390 (WI26_13380) phaP 2907415..2907996 (-) 582 WP_069226160.1 TIGR01841 family phasin -
  WI26_RS13395 (WI26_13385) - 2908452..2909216 (-) 765 WP_069226161.1 ParA family protein -
  WI26_RS33320 - 2909288..2909429 (-) 142 Protein_2644 DNA-3-methyladenine glycosylase -
  WI26_RS13400 (WI26_13390) ssb 2909586..2910137 (-) 552 WP_069226162.1 single-stranded DNA-binding protein Machinery gene
  WI26_RS13405 (WI26_13395) - 2910242..2911429 (-) 1188 WP_069226163.1 MFS transporter -
  WI26_RS13410 (WI26_13400) uvrA 2911705..2914590 (+) 2886 WP_059464498.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18757.56 Da        Isoelectric Point: 5.3400

>NTDB_id=162302 WI26_RS13400 WP_069226162.1 2909586..2910137(-) (ssb) [Burkholderia diffusa strain RF2-non-BP9]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGSGGGGGGGDEGGYGGGYGGGGGRGGEQMERGGGGGGRAGGAPRGGAG
GGQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=162302 WI26_RS13400 WP_069226162.1 2909586..2910137(-) (ssb) [Burkholderia diffusa strain RF2-non-BP9]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGCAAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTCGCGTTTTTCGGCCGTCTCGCCGAAATCGTCAGCGAATACCTGAAGAAGGGTTCGTCGGTCTATATCGAAGGC
CGTATCCGCACGCGCAAGTGGCAGGGCCAGGACGGCCAGGATCGCTATTCGACCGAAATCGTCGCAGACCAGATGCAGAT
GCTCGGCGGCCGCGGCGGTTCGGGCGGCGGCGGTGGCGGCGGTGACGAAGGCGGTTATGGCGGCGGCTACGGTGGTGGCG
GCGGCCGCGGCGGCGAACAGATGGAGCGCGGCGGTGGTGGCGGCGGCCGTGCCGGCGGCGCGCCGCGCGGCGGTGCAGGC
GGTGGTCAGAGCCGTCCGAGCGCGCCGGCAGGCGGCGGTTTCGACGAGATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.206

100

0.508
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.481
  ssb Neisseria meningitidis MC58

42.541

98.907

0.421
  ssb Neisseria gonorrhoeae MS11

42.541

98.907

0.421
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.612

100

0.366

Multiple sequence alignment