Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NPD5_RS11130 Genome accession   NZ_CP013243
Coordinates   2375718..2376164 (+) Length   148 a.a.
NCBI ID   WP_003359348.1    Uniprot ID   A0A0D1BNS4
Organism   Clostridium sporogenes strain CDC_1632     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2370718..2381164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPD5_RS11100 (NPD5_2190) - 2371315..2371560 (+) 246 WP_072585801.1 DUF3343 domain-containing protein -
  NPD5_RS11105 (NPD5_2191) - 2371567..2372436 (+) 870 WP_072585802.1 mechanosensitive ion channel family protein -
  NPD5_RS11110 (NPD5_2192) - 2372452..2372649 (+) 198 WP_003397342.1 DUF951 domain-containing protein -
  NPD5_RS11115 (NPD5_2193) - 2372971..2374116 (+) 1146 WP_072585803.1 double-cubane-cluster-containing anaerobic reductase -
  NPD5_RS11120 (NPD5_2194) - 2374164..2375312 (+) 1149 WP_072585804.1 double-cubane-cluster-containing anaerobic reductase -
  NPD5_RS11125 (NPD5_2195) rpsF 2375418..2375702 (+) 285 WP_003488078.1 30S ribosomal protein S6 -
  NPD5_RS11130 (NPD5_2196) ssbA 2375718..2376164 (+) 447 WP_003359348.1 single-stranded DNA-binding protein Machinery gene
  NPD5_RS11135 (NPD5_2197) rpsR 2376183..2376425 (+) 243 WP_003488080.1 30S ribosomal protein S18 -
  NPD5_RS11140 (NPD5_2198) - 2376574..2376891 (+) 318 WP_003488082.1 MazG-like family protein -
  NPD5_RS11145 (NPD5_2199) - 2376903..2377910 (+) 1008 WP_072585805.1 YybS family protein -
  NPD5_RS11150 (NPD5_2200) - 2377911..2379896 (+) 1986 WP_072585806.1 DHH family phosphoesterase -
  NPD5_RS11155 (NPD5_2201) rplI 2379896..2380339 (+) 444 WP_003359455.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16325.15 Da        Isoelectric Point: 4.7821

>NTDB_id=161071 NPD5_RS11130 WP_003359348.1 2375718..2376164(+) (ssbA) [Clostridium sporogenes strain CDC_1632]
MNKVVLIGRLTKDPELKFTPGNGTAVATFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTRRYVTEVIAEEVKFLEWGNKPTTDSTYNNGSEPSYQSGQGFGNGNSFDDDIIPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=161071 NPD5_RS11130 WP_003359348.1 2375718..2376164(+) (ssbA) [Clostridium sporogenes strain CDC_1632]
TTGAATAAAGTTGTTTTAATAGGTAGATTAACCAAAGATCCTGAGTTAAAATTTACTCCAGGAAATGGGACAGCAGTTGC
CACCTTTACTTTGGCTGTAGATAGAAGGTTTTCAAAAGATGGCCAGAGAGAAGCAGATTTCATCCCTATAGTAGTATGGG
GAAAACAAGCAGAATCTACAGCTAATTATATGAGTAAAGGAAAACTTATGGGTGTTAGTGGTAGAATTCAAACAAGAAGC
TATGAAGCTAAAGATGGTACAAGAAGATATGTAACAGAAGTCATAGCTGAAGAAGTTAAATTTCTTGAGTGGGGCAATAA
GCCTACAACGGATTCAACATATAATAATGGGTCAGAACCAAGTTACCAATCAGGCCAAGGCTTTGGAAATGGAAACAGTT
TTGACGACGATATAATTCCAGTGGATGATGGAGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1BNS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.837

100

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

46.269

90.541

0.419
  ssb Neisseria meningitidis MC58

33.526

100

0.392
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.34

69.595

0.385
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.398

69.595

0.372

Multiple sequence alignment