Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NPD7_RS17355 Genome accession   NZ_CP013242
Coordinates   3441891..3442337 (+) Length   148 a.a.
NCBI ID   WP_003359348.1    Uniprot ID   A0A0D1BNS4
Organism   Clostridium sporogenes strain CDC_67071     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3436891..3447337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPD7_RS17325 (NPD7_3155) - 3437469..3438623 (-) 1155 WP_045896892.1 aminotransferase class V-fold PLP-dependent enzyme -
  NPD7_RS17330 (NPD7_3156) - 3438814..3439059 (+) 246 WP_003495576.1 DUF3343 domain-containing protein -
  NPD7_RS17335 (NPD7_3157) - 3439066..3439935 (+) 870 WP_045897986.1 mechanosensitive ion channel family protein -
  NPD7_RS17340 (NPD7_3158) - 3439951..3440148 (+) 198 WP_003397342.1 DUF951 domain-containing protein -
  NPD7_RS17345 (NPD7_3159) - 3440337..3441485 (+) 1149 WP_096045028.1 double-cubane-cluster-containing anaerobic reductase -
  NPD7_RS17350 (NPD7_3160) rpsF 3441591..3441875 (+) 285 WP_003488078.1 30S ribosomal protein S6 -
  NPD7_RS17355 (NPD7_3161) ssbA 3441891..3442337 (+) 447 WP_003359348.1 single-stranded DNA-binding protein Machinery gene
  NPD7_RS17360 (NPD7_3162) rpsR 3442356..3442598 (+) 243 WP_003488080.1 30S ribosomal protein S18 -
  NPD7_RS17365 (NPD7_3163) - 3442748..3443065 (+) 318 WP_003488082.1 MazG-like family protein -
  NPD7_RS17370 (NPD7_3164) - 3443077..3444084 (+) 1008 WP_096045029.1 YybS family protein -
  NPD7_RS17375 (NPD7_3165) - 3444085..3446070 (+) 1986 WP_096045030.1 DHH family phosphoesterase -
  NPD7_RS17380 (NPD7_3166) rplI 3446070..3446513 (+) 444 WP_003359455.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16325.15 Da        Isoelectric Point: 4.7821

>NTDB_id=161057 NPD7_RS17355 WP_003359348.1 3441891..3442337(+) (ssbA) [Clostridium sporogenes strain CDC_67071]
MNKVVLIGRLTKDPELKFTPGNGTAVATFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTRRYVTEVIAEEVKFLEWGNKPTTDSTYNNGSEPSYQSGQGFGNGNSFDDDIIPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=161057 NPD7_RS17355 WP_003359348.1 3441891..3442337(+) (ssbA) [Clostridium sporogenes strain CDC_67071]
TTGAATAAAGTTGTTTTAATAGGTAGATTAACCAAAGATCCTGAGTTAAAATTTACTCCAGGAAATGGGACAGCAGTTGC
CACCTTTACTTTGGCTGTAGATAGAAGATTTTCAAAAGATGGCCAGAGAGAAGCAGATTTCATCCCTATAGTAGTATGGG
GAAAACAAGCAGAATCTACAGCTAATTATATGAGTAAAGGAAAACTTATGGGTGTTAGTGGTAGAATTCAAACAAGAAGC
TATGAAGCTAAAGATGGTACAAGAAGATATGTAACAGAAGTCATAGCTGAAGAAGTTAAATTTCTTGAGTGGGGCAATAA
GCCTACAACGGATTCAACATATAATAATGGGTCAGAACCAAGTTACCAATCAGGCCAAGGCTTTGGAAATGGAAACAGTT
TTGACGACGATATAATTCCAGTGGATGATGGAGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1BNS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.837

100

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

46.269

90.541

0.419
  ssb Neisseria meningitidis MC58

33.526

100

0.392
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.34

69.595

0.385
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.398

69.595

0.372

Multiple sequence alignment