Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   APQ13_RS02585 Genome accession   NZ_CP013237
Coordinates   535134..535823 (+) Length   229 a.a.
NCBI ID   WP_002268159.1    Uniprot ID   A0AAX1K3M3
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 530134..540823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS02560 (APQ13_02555) - 530862..531095 (+) 234 WP_002262193.1 DUF1858 domain-containing protein -
  APQ13_RS02565 (APQ13_02560) - 531095..532459 (+) 1365 WP_002289298.1 DUF438 domain-containing protein -
  APQ13_RS02570 (APQ13_02565) - 532586..533314 (-) 729 WP_002289300.1 ABC transporter permease -
  APQ13_RS02575 (APQ13_02570) - 533311..534051 (-) 741 WP_002289302.1 ABC transporter permease -
  APQ13_RS02580 (APQ13_02575) - 534051..534959 (-) 909 WP_002262197.1 ABC transporter ATP-binding protein -
  APQ13_RS02585 (APQ13_02580) scnR 535134..535823 (+) 690 WP_002268159.1 response regulator transcription factor Regulator
  APQ13_RS02590 (APQ13_02585) scnK 535824..537131 (+) 1308 WP_002289304.1 sensor histidine kinase Regulator
  APQ13_RS02595 (APQ13_02590) truB 537248..538129 (+) 882 WP_002289305.1 tRNA pseudouridine(55) synthase TruB -
  APQ13_RS02600 (APQ13_02595) - 538160..539080 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  APQ13_RS02605 (APQ13_02600) spx 539141..539554 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  APQ13_RS02610 (APQ13_02605) - 539547..539825 (+) 279 WP_002265496.1 UPF0223 family protein -
  APQ13_RS02615 (APQ13_02610) - 539815..540573 (+) 759 WP_002262204.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26264.61 Da        Isoelectric Point: 6.9650

>NTDB_id=160965 APQ13_RS02585 WP_002268159.1 535134..535823(+) (scnR) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MNYKEKKILILDDNPEILEMVQESLSIAGFNNLTSVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=160965 APQ13_RS02585 WP_002268159.1 535134..535823(+) (scnR) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTACAAGAGTCTTTAAGCAT
TGCTGGTTTTAACAACCTAACAAGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGATATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

98.69

100

0.987
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367

Multiple sequence alignment