Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   APQ13_RS02590 Genome accession   NZ_CP013237
Coordinates   535824..537131 (+) Length   435 a.a.
NCBI ID   WP_002289304.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 530824..542131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS02560 (APQ13_02555) - 530862..531095 (+) 234 WP_002262193.1 DUF1858 domain-containing protein -
  APQ13_RS02565 (APQ13_02560) - 531095..532459 (+) 1365 WP_002289298.1 DUF438 domain-containing protein -
  APQ13_RS02570 (APQ13_02565) - 532586..533314 (-) 729 WP_002289300.1 ABC transporter permease -
  APQ13_RS02575 (APQ13_02570) - 533311..534051 (-) 741 WP_002289302.1 ABC transporter permease -
  APQ13_RS02580 (APQ13_02575) - 534051..534959 (-) 909 WP_002262197.1 ABC transporter ATP-binding protein -
  APQ13_RS02585 (APQ13_02580) scnR 535134..535823 (+) 690 WP_002268159.1 response regulator transcription factor Regulator
  APQ13_RS02590 (APQ13_02585) scnK 535824..537131 (+) 1308 WP_002289304.1 sensor histidine kinase Regulator
  APQ13_RS02595 (APQ13_02590) truB 537248..538129 (+) 882 WP_002289305.1 tRNA pseudouridine(55) synthase TruB -
  APQ13_RS02600 (APQ13_02595) - 538160..539080 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  APQ13_RS02605 (APQ13_02600) spx 539141..539554 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  APQ13_RS02610 (APQ13_02605) - 539547..539825 (+) 279 WP_002265496.1 UPF0223 family protein -
  APQ13_RS02615 (APQ13_02610) - 539815..540573 (+) 759 WP_002262204.1 inositol monophosphatase family protein -
  APQ13_RS02620 (APQ13_02615) - 540637..541941 (+) 1305 WP_002266789.1 RsmF rRNA methyltransferase first C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 435 a.a.        Molecular weight: 50058.08 Da        Isoelectric Point: 9.6900

>NTDB_id=160966 APQ13_RS02590 WP_002289304.1 535824..537131(+) (scnK) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MDTIKFFTKLLTKYVLLVFALIVGVIFVYGLVFLIYLNYYGKEKPELVYTKIAQSSQQDAFNISKRSQKEMDKQKTWAMV
LNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVRGQQILVFGYPKKYSLAKFNFYLNTQFIKSFLHLGFV
FLGIIFLFIFVLFSRSKLRIKKEIEPIVSALTFLSQGQSAALNEKGNLSEIKTALNETSHILEESNMMKEQWIRGVSHDL
RNPLMLISGYTSQLEQQYGHGKQTEQIENQIQNMKEMISNLNLSYLLDNQKRHSKFSSLDLAVVLRSVIADILNNYETVI
LHFDLPAEAVLVKGDATLLERAFRNLLLNSIRHSGSNQIDLTYQLFDNKVIIIIADKGTITAQKIVELNQKSTNYESHGM
GTVITKQIIKLHQGETVFSDNHPGLKVTIVLPCNG

Nucleotide


Download         Length: 1308 bp        

>NTDB_id=160966 APQ13_RS02590 WP_002289304.1 535824..537131(+) (scnK) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGGATACCATTAAATTTTTTACGAAGTTATTGACAAAGTATGTTCTATTAGTATTTGCCTTAATTGTAGGAGTTATTTT
TGTTTATGGCTTGGTTTTCTTAATCTATCTTAATTATTATGGAAAGGAAAAACCAGAGCTAGTTTACACCAAAATCGCTC
AATCGAGTCAACAAGATGCGTTCAATATTAGTAAAAGAAGTCAAAAAGAAATGGATAAACAAAAGACTTGGGCTATGGTA
TTAAATCAAGATGGTCAGATCGTCCAATCTTATCGTTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
GAAATTTTCGCGCTGGTATTTAGATGATTATCCTGTTTTTTCCTATGTACGTGGTCAGCAGATTTTAGTTTTTGGCTACC
CTAAAAAGTATTCCCTAGCAAAGTTTAATTTTTATCTGAATACGCAATTTATTAAGAGTTTTCTTCATTTAGGGTTTGTT
TTCTTAGGCATCATCTTTTTATTTATCTTTGTTCTTTTTAGTCGTTCAAAGCTGCGCATTAAAAAGGAAATAGAGCCGAT
TGTCTCTGCGCTCACTTTCTTGTCGCAAGGTCAAAGTGCTGCTCTTAATGAAAAAGGCAATCTTTCTGAAATTAAGACAG
CTCTCAATGAAACTTCTCATATTTTAGAAGAAAGTAATATGATGAAAGAACAGTGGATTAGAGGAGTCAGTCACGATTTG
CGCAACCCGCTGATGCTGATTTCAGGCTACACCAGTCAATTGGAACAACAATATGGTCATGGAAAGCAAACGGAGCAGAT
TGAAAATCAGATTCAAAATATGAAAGAAATGATTTCTAATCTCAATTTGAGCTACCTGTTGGATAATCAAAAGCGTCATT
CCAAATTTTCAAGCCTTGATTTAGCTGTTGTCCTGCGATCCGTAATTGCTGATATTCTAAATAATTATGAAACAGTTATA
CTTCATTTTGATTTACCTGCAGAGGCAGTATTGGTAAAGGGTGATGCTACTTTACTAGAAAGGGCTTTTAGAAATCTTCT
GCTCAATAGTATTAGGCATAGTGGCTCTAATCAGATCGATTTGACTTATCAATTATTTGATAATAAAGTGATTATTATCA
TTGCAGATAAGGGAACTATTACAGCTCAGAAAATTGTAGAACTAAATCAAAAATCAACTAATTATGAGTCGCATGGCATG
GGCACCGTTATCACTAAGCAAATCATAAAACTTCATCAAGGTGAGACTGTCTTTTCAGATAATCATCCAGGTTTGAAAGT
GACGATTGTTTTGCCCTGTAACGGATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(334-432)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

98.152

99.54

0.977

Multiple sequence alignment