Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CPter91_RS23770 Genome accession   NZ_CP013234
Coordinates   5331827..5333356 (+) Length   509 a.a.
NCBI ID   WP_061945079.1    Uniprot ID   A0A127QBU8
Organism   Collimonas pratensis strain Ter91     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5326827..5338356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter91_RS23745 (CPter91_5173) - 5327181..5327954 (-) 774 WP_061945071.1 TorF family putative porin -
  CPter91_RS26780 - 5327978..5328208 (+) 231 WP_150119797.1 hypothetical protein -
  CPter91_RS23750 (CPter91_5174) - 5328239..5329729 (-) 1491 WP_061945073.1 PLP-dependent aminotransferase family protein -
  CPter91_RS23755 (CPter91_5175) - 5329729..5330802 (-) 1074 WP_061945075.1 alpha/beta fold hydrolase -
  CPter91_RS23760 (CPter91_5176) - 5331006..5331476 (+) 471 WP_236905898.1 GNAT family N-acetyltransferase -
  CPter91_RS23765 (CPter91_5177) - 5331574..5331816 (+) 243 WP_061945077.1 accessory factor UbiK family protein -
  CPter91_RS23770 (CPter91_5178) comM 5331827..5333356 (+) 1530 WP_061945079.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CPter91_RS23775 (CPter91_5180) - 5333649..5334008 (+) 360 WP_061945081.1 carboxypeptidase-like regulatory domain-containing protein -
  CPter91_RS23780 (CPter91_5181) - 5334323..5334580 (+) 258 WP_014008142.1 DUF3567 domain-containing protein -
  CPter91_RS23785 (CPter91_5182) trmB 5334703..5335392 (+) 690 WP_061945083.1 tRNA (guanine(46)-N(7))-methyltransferase TrmB -
  CPter91_RS23790 (CPter91_5183) - 5335447..5337360 (-) 1914 WP_417924829.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54960.02 Da        Isoelectric Point: 8.6607

>NTDB_id=160911 CPter91_RS23770 WP_061945079.1 5331827..5333356(+) (comM) [Collimonas pratensis strain Ter91]
MTLAVLKSRALAGMQAPAVTVEVHLANGLPSFTIVGLPETEVKESKDRVRAALQNARFEFPSRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPADELDDYEFAGELSLSGELRPIRGALAMTFAMTSPRASTPASKSRAFILPQANADEAALVSDA
RILPADSLLQVCAHFSSKQAETRLSRHTAELQQRPPRYQDFSDVKGQLQAKRALEVAAAGGHSVLLMGPPGTGKSMLAAR
FPGILPPMSDLDALESAAVQSLTSGFSSANWKVRPYRAPHHTASAVALVGGGSPPRPGEISLAHRGVLFLDELPQFDRRV
LEVLREPLECGRITISRAARQADFPAQFQLIAAMNPCPCGYLGHPVKQCRCTPDNILRYQNKISGPLIDRIDMQIQVPAL
PHDQLLKAAEGESSALIAARVERICALQLARQGKQNNALSTNEIDAYCKPDSAGENILRTAMARLDWSARGYHRVLKVAR
TIADLDATENIAAKHVAEAIQYRRALQQA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=160911 CPter91_RS23770 WP_061945079.1 5331827..5333356(+) (comM) [Collimonas pratensis strain Ter91]
GTGACGCTGGCTGTCCTGAAAAGCCGGGCGCTGGCAGGCATGCAAGCGCCCGCAGTCACGGTGGAAGTCCATCTGGCCAA
CGGCCTGCCCAGCTTCACCATCGTCGGCCTGCCCGAAACCGAGGTCAAGGAATCCAAAGACCGGGTGCGCGCGGCGCTGC
AAAATGCCCGTTTTGAATTCCCTTCCCGCCGCATTACCGTCAATCTGGCGCCTGCCGACTTGCCCAAGGAATCGGGCCGC
TTCGACTTGCCGATTGCGCTCGGCATCCTGGCAGCATCTGGACAAATTCCAGCGGATGAACTGGACGACTACGAATTCGC
CGGCGAACTGTCGCTCTCTGGTGAACTGCGGCCGATACGCGGGGCGCTGGCGATGACCTTCGCGATGACCAGCCCCCGCG
CCAGTACGCCAGCCAGCAAAAGCCGCGCCTTCATCCTGCCCCAGGCCAATGCCGACGAGGCGGCCCTGGTCAGCGACGCC
CGCATTTTGCCGGCCGACAGCTTGCTGCAAGTGTGTGCCCACTTTTCCTCTAAGCAAGCAGAAACAAGACTATCCCGCCA
CACCGCGGAACTGCAGCAGAGGCCGCCACGCTATCAAGATTTCAGCGATGTCAAAGGCCAACTGCAAGCCAAGCGCGCAC
TGGAGGTCGCCGCGGCCGGCGGTCATAGCGTGCTGCTGATGGGTCCGCCGGGCACCGGCAAGTCGATGCTGGCAGCGCGT
TTCCCTGGCATTTTGCCGCCGATGAGCGATCTCGATGCGCTGGAGTCGGCGGCAGTACAGTCGCTCACCAGCGGCTTTTC
CAGCGCCAATTGGAAGGTGCGGCCATACCGAGCGCCGCATCACACGGCATCGGCCGTGGCGCTGGTTGGCGGTGGCAGCC
CGCCCCGTCCCGGCGAAATTTCGCTGGCGCACCGCGGCGTGCTGTTCCTTGACGAGCTGCCGCAATTCGACCGCCGCGTG
CTGGAAGTATTGCGCGAGCCGCTGGAATGCGGCCGCATCACGATTTCTCGTGCAGCCCGGCAAGCCGACTTTCCCGCACA
ATTCCAGCTGATCGCCGCCATGAACCCCTGCCCTTGCGGCTACTTGGGACACCCGGTCAAGCAATGCCGTTGCACGCCCG
ACAATATCCTGCGCTATCAGAACAAGATATCGGGCCCGCTAATCGATCGTATCGACATGCAGATCCAGGTGCCAGCCTTG
CCTCACGACCAGCTGCTGAAGGCCGCCGAGGGTGAATCGTCGGCGCTCATCGCGGCGCGCGTCGAACGCATTTGCGCGCT
GCAGCTGGCGCGCCAGGGTAAGCAGAACAATGCACTGTCGACCAATGAAATCGATGCCTATTGCAAACCCGACAGCGCTG
GCGAAAACATCCTGCGCACCGCCATGGCGCGCCTCGACTGGTCGGCGCGCGGCTATCACCGCGTACTGAAAGTGGCGCGC
ACCATCGCCGACCTGGATGCGACAGAAAACATTGCTGCCAAGCATGTCGCTGAGGCGATTCAATATCGCCGCGCGTTGCA
ACAAGCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QBU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.996

100

0.544
  comM Vibrio campbellii strain DS40M4

53.179

100

0.542
  comM Haemophilus influenzae Rd KW20

50.29

100

0.511
  comM Legionella pneumophila strain ERS1305867

50

100

0.509
  comM Legionella pneumophila str. Paris

50

100

0.509
  comM Glaesserella parasuis strain SC1401

50.884

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.543

100

0.462

Multiple sequence alignment