Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ASL14_RS19635 Genome accession   NZ_CP013203
Coordinates   4183269..4183730 (+) Length   153 a.a.
NCBI ID   WP_134913137.1    Uniprot ID   A0A0S2S8E9
Organism   Paenibacillus sp. IHB B 3084     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4178269..4188730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASL14_RS19605 (ASL14_19150) - 4178945..4179763 (+) 819 WP_223264044.1 S1 RNA-binding domain-containing protein -
  ASL14_RS19610 (ASL14_19155) - 4179776..4180480 (+) 705 WP_134913133.1 hypothetical protein -
  ASL14_RS19615 (ASL14_19160) - 4180925..4181266 (+) 342 WP_134913134.1 hypothetical protein -
  ASL14_RS19620 (ASL14_19165) - 4181374..4182279 (+) 906 WP_134913135.1 hypothetical protein -
  ASL14_RS19625 (ASL14_19170) - 4182276..4182602 (+) 327 WP_223264045.1 hypothetical protein -
  ASL14_RS19630 (ASL14_19175) - 4182592..4183266 (+) 675 WP_134913136.1 hypothetical protein -
  ASL14_RS19635 (ASL14_19180) ssbA 4183269..4183730 (+) 462 WP_134913137.1 single-stranded DNA-binding protein Machinery gene
  ASL14_RS19640 (ASL14_19185) - 4183733..4184422 (+) 690 WP_134913138.1 PD-(D/E)XK nuclease family protein -
  ASL14_RS19645 (ASL14_19190) - 4184422..4184613 (+) 192 WP_134913139.1 hypothetical protein -
  ASL14_RS19650 (ASL14_19195) - 4184655..4185521 (+) 867 WP_134913140.1 hypothetical protein -
  ASL14_RS19655 (ASL14_19200) - 4185650..4186009 (+) 360 WP_134913141.1 hypothetical protein -
  ASL14_RS19660 (ASL14_19205) radC 4186200..4186589 (+) 390 WP_257721149.1 DNA repair protein RadC -
  ASL14_RS29110 - 4186589..4186717 (+) 129 WP_257721124.1 hypothetical protein -
  ASL14_RS19665 (ASL14_19210) - 4186764..4187075 (+) 312 WP_134913143.1 hypothetical protein -
  ASL14_RS19670 (ASL14_19215) - 4187092..4187355 (+) 264 WP_134913144.1 hypothetical protein -
  ASL14_RS19675 (ASL14_19220) - 4187490..4188290 (+) 801 WP_134913145.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16768.42 Da        Isoelectric Point: 5.1598

>NTDB_id=160652 ASL14_RS19635 WP_134913137.1 4183269..4183730(+) (ssbA) [Paenibacillus sp. IHB B 3084]
MSLNQVVLIGRLTKDPELRYTPSGVAVAQFTLAVDRPFTSQDGEKEADFIPIVVWKTIAENVANYVKKGQQVAITGRIQV
RNYENNEGRRVFVTEVIGQNVQFLTPQQNGGQQASGANNSGNSGNRNAQSGRQSSSNNNQGNAWDINDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=160652 ASL14_RS19635 WP_134913137.1 4183269..4183730(+) (ssbA) [Paenibacillus sp. IHB B 3084]
ATGAGCTTGAACCAAGTCGTGTTAATCGGAAGACTGACGAAGGACCCGGAACTGCGTTACACACCTTCAGGAGTGGCTGT
GGCTCAATTCACTTTGGCTGTAGACCGTCCGTTTACAAGCCAAGATGGAGAAAAGGAAGCGGACTTTATTCCTATCGTCG
TTTGGAAGACCATTGCTGAGAACGTGGCGAACTACGTGAAGAAAGGACAACAAGTGGCTATCACGGGCAGGATTCAAGTT
CGGAATTACGAGAACAATGAAGGTCGTCGCGTATTTGTGACGGAAGTAATTGGGCAAAATGTTCAGTTCTTGACCCCACA
GCAAAACGGAGGTCAACAAGCTTCCGGGGCGAACAATTCAGGCAACAGTGGAAATCGGAATGCACAGTCTGGTCGTCAAA
GCAGCTCGAATAATAACCAAGGTAATGCTTGGGACATTAATGACGATGATCTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2S8E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.621
  ssb Latilactobacillus sakei subsp. sakei 23K

46.746

100

0.516
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.286

68.627

0.373
  ssb Vibrio cholerae strain A1552

32.558

100

0.366

Multiple sequence alignment