Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CMT41_RS17340 Genome accession   NZ_CP013145
Coordinates   4097618..4099141 (-) Length   507 a.a.
NCBI ID   WP_058027968.1    Uniprot ID   A0A0S2JKD1
Organism   Colwellia sp. MT41     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4092618..4104141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMT41_RS17320 (CMT41_17320) - 4093446..4094273 (+) 828 WP_058027965.1 hypothetical protein -
  CMT41_RS17325 (CMT41_17325) - 4094304..4094618 (-) 315 WP_057183131.1 pyrimidine/purine nucleoside phosphorylase -
  CMT41_RS17330 (CMT41_17330) ilvC 4095035..4096516 (-) 1482 WP_058027966.1 ketol-acid reductoisomerase -
  CMT41_RS17335 (CMT41_17335) ilvY 4096724..4097602 (+) 879 WP_058027967.1 HTH-type transcriptional activator IlvY -
  CMT41_RS17340 (CMT41_17340) comM 4097618..4099141 (-) 1524 WP_058027968.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CMT41_RS17345 (CMT41_17345) ilvG 4099585..4101249 (+) 1665 WP_058027969.1 acetolactate synthase 2 catalytic subunit -
  CMT41_RS17350 (CMT41_17350) ilvM 4101251..4101514 (+) 264 WP_057183140.1 acetolactate synthase 2 small subunit -
  CMT41_RS17355 (CMT41_17355) ilvA 4101816..4103384 (+) 1569 WP_197410305.1 threonine ammonia-lyase, biosynthetic -
  CMT41_RS17360 (CMT41_17360) - 4103518..4103997 (-) 480 WP_082606605.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55704.21 Da        Isoelectric Point: 8.0481

>NTDB_id=160315 CMT41_RS17340 WP_058027968.1 4097618..4099141(-) (comM) [Colwellia sp. MT41]
MSLSCVYSRARVGLESPLVTVEVHLANGLPAFNIVGLPETSVKEAKDRVRSAIINCGYEFPAKRITINLAPADLPKEGGR
FDLPIAVGILAASEQLPPVDLSQYEFAGELALSGELRAIVGEIPVAMACSQSQRTLIIPMQNTEQASWVKQAKIHGISHL
TQLFPHFAGQKVLPLVTEQLIAEELGGQGLDMSDVMGQPLAKRALEMAASGGHNLLFIGPPGTGKTMLASRLAGILPPMT
EQEALEVAAIQSISHHEITRNSWFTRPFRAPHHTASSAALVGGGSQPKPGEITLAHNGVLFLDELPEFERKVLDVLREPM
ESGEVTISRALHKQCFPARFQLIAAMNPSPTGFYNDKRSTPEQVLRYLNRLSGPFLDRIDIQIEVARLPRGTWAQSSQKN
ETSVQIQQRVQVCRAIQLQRQGKANAHISSRELKQYCQLTADDNEFLELAVEKLGLSTRAHHKILKISRTLADMEKSPEI
LRKHLTEALSYRAMDRLLRHLTSAIAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=160315 CMT41_RS17340 WP_058027968.1 4097618..4099141(-) (comM) [Colwellia sp. MT41]
ATGTCACTTTCCTGTGTGTATAGTCGAGCTCGAGTTGGTCTTGAATCTCCTCTCGTTACTGTTGAAGTTCACCTAGCGAA
TGGCCTGCCGGCATTCAATATTGTTGGTTTACCAGAAACCTCGGTAAAAGAAGCAAAAGACCGAGTACGTAGTGCCATTA
TCAACTGCGGCTATGAGTTTCCCGCTAAGCGCATCACTATCAACTTAGCACCGGCCGACCTACCCAAGGAAGGCGGCCGC
TTTGATTTACCTATTGCTGTTGGTATTCTCGCGGCGTCCGAGCAGTTACCACCAGTGGATTTATCCCAATATGAATTTGC
CGGTGAATTGGCTTTATCGGGTGAACTCAGAGCCATTGTTGGTGAAATCCCTGTCGCTATGGCATGTAGTCAAAGTCAGC
GAACCTTGATAATTCCCATGCAAAACACCGAGCAAGCTAGTTGGGTCAAGCAAGCAAAAATTCATGGCATTAGCCATTTA
ACCCAGTTGTTTCCACACTTTGCCGGTCAAAAAGTTTTACCCTTGGTTACTGAACAGCTCATTGCCGAAGAGTTGGGTGG
ACAAGGGTTAGATATGAGTGATGTCATGGGCCAGCCCTTGGCAAAACGTGCTTTAGAAATGGCCGCCAGTGGGGGTCATA
ATTTATTGTTTATCGGTCCGCCGGGAACAGGGAAAACCATGTTAGCCAGTCGTTTAGCAGGAATTCTACCGCCAATGACC
GAGCAAGAAGCACTAGAAGTCGCTGCTATTCAATCGATTAGCCATCATGAGATTACTCGTAACTCTTGGTTTACTCGACC
GTTTCGTGCCCCTCATCACACGGCTTCGTCAGCTGCTTTAGTGGGCGGTGGCAGTCAGCCTAAACCTGGGGAAATTACTT
TAGCGCACAATGGCGTGCTTTTTTTAGATGAATTGCCTGAGTTTGAACGAAAAGTATTAGACGTATTACGTGAGCCAATG
GAATCGGGAGAAGTCACTATCTCGCGAGCTTTACACAAACAATGTTTTCCAGCACGTTTTCAACTGATTGCCGCGATGAA
CCCTAGCCCAACGGGTTTTTATAACGATAAACGCAGCACACCAGAGCAAGTGTTGCGCTATTTAAATCGTTTATCGGGGC
CATTTCTTGATCGAATTGATATTCAAATTGAAGTGGCCAGATTACCTCGCGGTACCTGGGCACAGAGCAGTCAAAAAAAT
GAAACAAGTGTCCAAATACAACAGCGAGTGCAAGTCTGTCGGGCGATTCAGTTACAAAGACAAGGCAAAGCTAATGCTCA
TATCAGCAGTCGGGAGTTGAAACAATATTGCCAGTTAACTGCTGATGACAATGAATTTTTAGAGCTAGCGGTAGAAAAAT
TGGGTTTATCAACCCGTGCACACCATAAAATTTTAAAAATCTCTCGTACGCTAGCGGATATGGAAAAATCGCCAGAAATT
CTTCGCAAGCACTTGACCGAAGCGTTATCTTATCGGGCGATGGATCGGTTGTTACGTCACTTAACCAGCGCAATTGCCGT
TTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2JKD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.957

100

0.582
  comM Glaesserella parasuis strain SC1401

57.115

99.803

0.57
  comM Vibrio cholerae strain A1552

56.832

99.606

0.566
  comM Vibrio campbellii strain DS40M4

56.832

99.606

0.566
  comM Legionella pneumophila str. Paris

48.2

98.619

0.475
  comM Legionella pneumophila strain ERS1305867

48.2

98.619

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.455

99.803

0.454

Multiple sequence alignment