Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CMT41_RS15505 Genome accession   NZ_CP013145
Coordinates   3658565..3659425 (+) Length   286 a.a.
NCBI ID   WP_057182704.1    Uniprot ID   A0A0S2JL57
Organism   Colwellia sp. MT41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3653565..3664425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMT41_RS15495 (CMT41_15495) pilB 3655329..3657029 (+) 1701 WP_057182476.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CMT41_RS15500 (CMT41_15500) pilC 3657145..3658401 (+) 1257 WP_057182477.1 type II secretion system F family protein Machinery gene
  CMT41_RS15505 (CMT41_15505) pilD 3658565..3659425 (+) 861 WP_057182704.1 A24 family peptidase Machinery gene
  CMT41_RS15510 (CMT41_15510) coaE 3659444..3660052 (+) 609 WP_058027774.1 dephospho-CoA kinase -
  CMT41_RS15515 (CMT41_15515) zapD 3660117..3660869 (+) 753 WP_058027775.1 cell division protein ZapD -
  CMT41_RS15520 (CMT41_15520) yacG 3660982..3661218 (+) 237 WP_058027776.1 DNA gyrase inhibitor YacG -
  CMT41_RS15525 (CMT41_15525) mutT 3661229..3661657 (-) 429 WP_058027777.1 8-oxo-dGTP diphosphatase MutT -
  CMT41_RS15530 (CMT41_15530) secA 3661742..3664423 (-) 2682 WP_058027778.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32145.13 Da        Isoelectric Point: 7.7062

>NTDB_id=160314 CMT41_RS15505 WP_057182704.1 3658565..3659425(+) (pilD) [Colwellia sp. MT41]
MQQSATLFYFTVGLFSLAIGSFLNVVIYRTPKMMEYTWYHDCREFLADEVKNIKAKNLTAMTLSKPNSSCPSCGHNIRFY
ENIPVLSWLMLKGKCSQCANTISARYPLVEISTMLLSLIVAQHFGVTSETFFALILTWGLITLTMIDFDHMLLPDQITLP
LLWLGLLININGTFAPLTDAVIGAAVGYMSLFSVFWIFKLFTGKEGMGFGDFKLFAVFGAWLGWQLLPLLILMASVVGAI
VGISLILFKNHQRQQGIPFGPYLAIAGWLTLLWGDGIWSWYLQLLH

Nucleotide


Download         Length: 861 bp        

>NTDB_id=160314 CMT41_RS15505 WP_057182704.1 3658565..3659425(+) (pilD) [Colwellia sp. MT41]
ATGCAGCAATCTGCCACTTTGTTTTATTTCACTGTTGGATTATTTTCCCTCGCTATCGGCAGCTTTTTAAATGTGGTAAT
TTACCGCACGCCAAAGATGATGGAATATACTTGGTATCATGACTGCCGAGAGTTTTTAGCCGATGAAGTAAAAAATATTA
AAGCTAAAAACCTTACCGCGATGACCTTATCCAAACCTAATTCTAGCTGTCCAAGTTGCGGCCATAATATCCGCTTTTAT
GAAAATATTCCTGTGCTAAGCTGGCTTATGCTCAAGGGAAAATGTAGTCAATGTGCCAATACAATTTCTGCACGCTATCC
CCTAGTTGAAATATCAACAATGCTGTTAAGCCTTATTGTTGCTCAGCATTTTGGCGTTACCAGTGAAACCTTTTTTGCTT
TGATACTTACCTGGGGCCTAATAACATTAACCATGATAGATTTTGATCATATGTTATTGCCTGATCAAATTACCCTACCA
CTATTATGGCTAGGTTTATTGATAAATATTAATGGTACATTTGCCCCGCTAACCGATGCAGTTATTGGCGCCGCTGTTGG
TTATATGAGCTTATTTTCTGTCTTTTGGATTTTTAAGTTATTTACCGGCAAAGAGGGCATGGGCTTTGGCGACTTTAAGT
TATTTGCCGTTTTTGGTGCTTGGCTAGGTTGGCAATTATTGCCACTGCTTATTTTGATGGCGTCCGTGGTCGGTGCTATT
GTTGGCATTAGCTTAATATTATTCAAAAACCATCAAAGGCAGCAAGGTATTCCTTTTGGTCCTTATTTAGCCATAGCGGG
TTGGCTCACTTTGTTATGGGGTGACGGTATTTGGTCGTGGTACTTACAGCTACTACACTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(14-124)

Type IV leader peptidase family (Peptidase_A24)

(134-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2JL57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.191

98.601

0.524
  pilD Acinetobacter baumannii D1279779

53.214

97.902

0.521
  pilD Acinetobacter nosocomialis M2

52.857

97.902

0.517
  pilD Vibrio campbellii strain DS40M4

51.087

96.503

0.493
  pilD Neisseria gonorrhoeae MS11

44.689

95.455

0.427

Multiple sequence alignment