Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CMT41_RS15500 Genome accession   NZ_CP013145
Coordinates   3657145..3658401 (+) Length   418 a.a.
NCBI ID   WP_057182477.1    Uniprot ID   A0A0S2JIZ0
Organism   Colwellia sp. MT41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3652145..3663401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMT41_RS15490 (CMT41_15490) - 3653043..3655058 (-) 2016 WP_058027773.1 acyltransferase family protein -
  CMT41_RS15495 (CMT41_15495) pilB 3655329..3657029 (+) 1701 WP_057182476.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CMT41_RS15500 (CMT41_15500) pilC 3657145..3658401 (+) 1257 WP_057182477.1 type II secretion system F family protein Machinery gene
  CMT41_RS15505 (CMT41_15505) pilD 3658565..3659425 (+) 861 WP_057182704.1 A24 family peptidase Machinery gene
  CMT41_RS15510 (CMT41_15510) coaE 3659444..3660052 (+) 609 WP_058027774.1 dephospho-CoA kinase -
  CMT41_RS15515 (CMT41_15515) zapD 3660117..3660869 (+) 753 WP_058027775.1 cell division protein ZapD -
  CMT41_RS15520 (CMT41_15520) yacG 3660982..3661218 (+) 237 WP_058027776.1 DNA gyrase inhibitor YacG -
  CMT41_RS15525 (CMT41_15525) mutT 3661229..3661657 (-) 429 WP_058027777.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45430.73 Da        Isoelectric Point: 9.7887

>NTDB_id=160313 CMT41_RS15500 WP_057182477.1 3657145..3658401(+) (pilC) [Colwellia sp. MT41]
MAITSNKKSTRTQKKVKKQEVFIWHGVNRKGKKIKGELTANNVIELKAQLRKQGITPSRVKKKPKPLFGMGGDKAITPMD
IALITRQIATMLGAGVPLVQTIQMIGKGHDNGNMRTLLADIEVKLSSGIPLSDCLRAHPLFFDDLYCDLVASGEQSGSLE
TIYGRIATYKEKAEALKSKIKKAMTYPIAVLVIAAIVTSILLIFVVPVFQEIFAGFGAELPGFTLFVIGISEFMQAYWYF
GLAGLYLALFLFKRAHRNSQTLRDSVDKNILKLPVIGDLLKKAAVARYARTLSTTFAAGVPLVDALESAAGASGNAVFRD
AILEVRAEVTSGMQMNLAMRNCNIFPDMVIQMVAIGEESGAVDDMLSKVATVYEQQVDDAVDGLTALLEPMIMAVLGVVI
GGLIIAMYLPIFEIGKII

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=160313 CMT41_RS15500 WP_057182477.1 3657145..3658401(+) (pilC) [Colwellia sp. MT41]
ATGGCTATTACATCAAATAAAAAATCGACTAGAACTCAAAAAAAAGTAAAAAAACAAGAAGTTTTTATTTGGCATGGCGT
CAACCGTAAAGGTAAAAAAATAAAAGGTGAATTAACGGCCAATAATGTCATTGAACTAAAGGCACAGTTACGTAAACAAG
GCATAACCCCAAGTCGGGTCAAGAAAAAGCCCAAGCCTTTATTCGGCATGGGGGGTGATAAAGCAATAACCCCGATGGAT
ATTGCCCTTATTACCCGCCAAATAGCAACCATGTTAGGCGCTGGTGTGCCTCTAGTACAAACCATTCAAATGATTGGCAA
GGGACACGACAATGGTAATATGCGTACCTTGCTAGCGGATATTGAGGTGAAATTATCTTCCGGCATACCATTATCGGACT
GTTTACGTGCTCATCCGCTTTTTTTCGACGATCTTTATTGTGACCTTGTTGCCTCTGGTGAACAATCTGGGTCTTTAGAA
ACTATCTATGGTCGTATAGCAACCTATAAAGAAAAAGCCGAAGCATTAAAAAGTAAAATTAAAAAAGCCATGACTTATCC
TATTGCCGTGTTAGTAATAGCGGCAATTGTAACGTCAATTTTACTTATTTTTGTTGTGCCGGTATTTCAGGAGATATTTG
CGGGTTTTGGTGCTGAATTACCCGGATTTACGCTATTTGTCATAGGTATTTCCGAGTTTATGCAGGCCTATTGGTATTTT
GGCTTGGCCGGTCTGTACCTGGCATTGTTCTTATTTAAACGCGCCCATAGAAATAGCCAAACACTGCGTGATAGTGTCGA
TAAAAACATTCTAAAACTACCGGTGATTGGTGATTTATTAAAAAAAGCCGCTGTTGCCCGCTATGCTCGTACCCTATCAA
CCACGTTTGCCGCCGGTGTGCCTCTGGTTGATGCGCTCGAATCCGCTGCGGGAGCTTCCGGTAATGCGGTATTTCGTGAT
GCGATTCTTGAGGTGCGGGCGGAAGTTACTTCCGGCATGCAAATGAACCTAGCTATGCGTAACTGTAATATATTCCCCGA
TATGGTTATCCAAATGGTTGCTATTGGTGAAGAGTCAGGTGCCGTTGACGACATGTTATCGAAAGTAGCCACTGTATACG
AGCAGCAAGTAGATGATGCCGTCGATGGTTTAACTGCTCTATTAGAGCCAATGATCATGGCAGTACTCGGTGTCGTTATT
GGTGGTTTAATCATAGCCATGTACTTACCAATATTTGAAATTGGCAAGATTATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-207)

Type II secretion system (T2SS), protein F (T2SSF)

(289-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2JIZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.728

96.89

0.598
  pilC Acinetobacter baumannii D1279779

52.346

96.89

0.507
  pilC Acinetobacter baylyi ADP1

51.852

96.89

0.502
  pilC Legionella pneumophila strain ERS1305867

51.637

94.976

0.49
  pilC Vibrio cholerae strain A1552

43.829

94.976

0.416
  pilG Neisseria meningitidis 44/76-A

41.379

97.129

0.402
  pilG Neisseria gonorrhoeae MS11

41.379

97.129

0.402
  pilC Vibrio campbellii strain DS40M4

41.457

95.215

0.395

Multiple sequence alignment