Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CMT41_RS03405 Genome accession   NZ_CP013145
Coordinates   801701..802384 (+) Length   227 a.a.
NCBI ID   WP_058026357.1    Uniprot ID   -
Organism   Colwellia sp. MT41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 796701..807384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMT41_RS03390 (CMT41_03390) - 797285..799135 (-) 1851 WP_058026354.1 hypothetical protein -
  CMT41_RS03395 (CMT41_03395) - 799230..800846 (-) 1617 WP_058026355.1 amidohydrolase family protein -
  CMT41_RS03400 (CMT41_03400) - 800987..801391 (+) 405 WP_058026356.1 thioesterase family protein -
  CMT41_RS03405 (CMT41_03405) ssb 801701..802384 (+) 684 WP_058026357.1 single-stranded DNA-binding protein Machinery gene
  CMT41_RS03410 (CMT41_03410) - 802868..803875 (+) 1008 WP_058026358.1 adenosine deaminase -
  CMT41_RS03415 (CMT41_03415) - 804042..804767 (-) 726 WP_058026359.1 transporter substrate-binding domain-containing protein -
  CMT41_RS03420 (CMT41_03420) - 805021..806004 (-) 984 WP_058026360.1 DUF4382 domain-containing protein -
  CMT41_RS03425 (CMT41_03425) - 806263..806874 (+) 612 WP_058026361.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24656.96 Da        Isoelectric Point: 5.0019

>NTDB_id=160298 CMT41_RS03405 WP_058026357.1 801701..802384(+) (ssb) [Colwellia sp. MT41]
MAGVNKVIIVGNLGKDPEVRFMPNGSAVANITVATSDSWKDKQTGEQKEKTEWHRVVIFGKLAEIAGEYLKKGSKVYLEG
SLQTRKWTNQQGQEQYTTEIVLQGFNGVMQMLDGKSSQGQSGGFSNQGQQQQAPQQDGFSNQEQQAPAQQGGFANQGQQQ
QAPAQQGGFANQGQQQQAPAQQGGFSNQGQQQKAPAQQGGFAKQEQQQAPKVNPQEPSIDFDDDIPF

Nucleotide


Download         Length: 684 bp        

>NTDB_id=160298 CMT41_RS03405 WP_058026357.1 801701..802384(+) (ssb) [Colwellia sp. MT41]
ATGGCGGGTGTAAATAAAGTAATCATAGTAGGTAACTTAGGTAAAGATCCTGAGGTCCGTTTTATGCCAAATGGCAGCGC
AGTAGCAAATATTACTGTAGCAACGTCAGACTCATGGAAAGATAAACAAACTGGTGAGCAGAAAGAAAAAACTGAATGGC
ATCGTGTTGTTATTTTTGGCAAACTAGCTGAAATTGCCGGTGAGTACCTTAAAAAAGGTTCAAAAGTATACCTTGAAGGT
TCATTACAAACACGTAAATGGACCAATCAACAAGGTCAAGAGCAATATACCACTGAAATCGTCCTACAAGGCTTTAACGG
GGTAATGCAAATGTTAGATGGTAAATCGTCTCAAGGGCAGAGCGGTGGTTTCTCTAATCAAGGGCAGCAGCAACAAGCAC
CACAACAAGATGGTTTCTCTAATCAAGAGCAGCAAGCACCAGCACAACAAGGTGGTTTCGCTAATCAAGGCCAGCAGCAA
CAAGCACCAGCACAACAAGGTGGCTTCGCTAATCAAGGCCAGCAACAACAAGCCCCAGCACAGCAAGGTGGCTTCTCTAA
CCAAGGTCAGCAACAAAAAGCGCCTGCTCAACAAGGTGGCTTTGCTAAGCAAGAGCAGCAGCAAGCTCCGAAAGTGAATC
CACAAGAACCATCAATTGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.889

99.119

0.524
  ssb Glaesserella parasuis strain SC1401

48.472

100

0.489
  ssb Neisseria gonorrhoeae MS11

40.265

99.559

0.401
  ssb Neisseria meningitidis MC58

39.207

100

0.392

Multiple sequence alignment