Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD2   Type   Regulator
Locus tag   BBD27_RS11505 Genome accession   NZ_CP016394
Coordinates   1134624..1135151 (-) Length   175 a.a.
NCBI ID   WP_231107203.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ND07     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129624..1140151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD27_RS06030 (BBD27_ps38) - 1130895..1133047 (+) 2153 Protein_1122 peptide cleavage/export ABC transporter -
  BBD27_RS06035 (BBD27_1180) comB 1133063..1134430 (+) 1368 WP_011681574.1 bacteriocin secretion accessory protein Regulator
  BBD27_RS06040 (BBD27_1181) - 1134445..1134606 (+) 162 WP_011681573.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  BBD27_RS11505 comD/comD2 1134624..1135151 (-) 528 WP_231107203.1 ATP-binding protein Regulator
  BBD27_RS06050 (BBD27_1183) comE/blpR 1135964..1136695 (-) 732 WP_002948869.1 LytR/AlgR family response regulator transcription factor Regulator
  BBD27_RS06055 (BBD27_1184) - 1136951..1137127 (+) 177 WP_011681570.1 Blp family class II bacteriocin -
  BBD27_RS06060 (BBD27_1185) - 1137146..1137346 (+) 201 WP_011681569.1 hypothetical protein -
  BBD27_RS06065 (BBD27_1186) - 1137702..1137932 (+) 231 WP_014608662.1 bacteriocin class II family protein -
  BBD27_RS11870 - 1138937..1139338 (+) 402 WP_024703992.1 hypothetical protein -
  BBD27_RS06080 (BBD27_1189) - 1139589..1139843 (+) 255 WP_014608660.1 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19716.28 Da        Isoelectric Point: 4.3967

>NTDB_id=160045 BBD27_RS11505 WP_231107203.1 1134624..1135151(-) (comD/comD2) [Streptococcus thermophilus strain ND07]
MDIVKEVYDSVLQESDKRLNTRNFDLARLVNIQDNTLKSLLSAKVLQAEEEGIEAQISIPEPIHLIGMETLDFIIVTSIF
LDNAIEGAIQTQNPKITISFWEDHCSQLLSISNTISEEKTETKTIFERGVSNKGRERGIGLANVTEILDNYINVNLETQS
NNFSFTQQLTITKKA

Nucleotide


Download         Length: 528 bp        

>NTDB_id=160045 BBD27_RS11505 WP_231107203.1 1134624..1135151(-) (comD/comD2) [Streptococcus thermophilus strain ND07]
ATGGATATTGTCAAAGAAGTCTATGATAGTGTGCTTCAAGAATCCGATAAACGATTAAATACAAGAAACTTTGACTTAGC
TAGACTCGTTAATATTCAGGATAATACTTTGAAAAGCCTTCTGTCCGCAAAAGTTTTACAAGCAGAAGAAGAAGGTATTG
AAGCTCAGATTAGCATCCCAGAACCCATCCACTTGATTGGGATGGAGACTCTGGACTTCATTATCGTCACTTCTATTTTT
TTAGATAACGCTATTGAAGGTGCCATTCAAACTCAAAACCCTAAAATTACTATTAGCTTTTGGGAAGATCATTGTTCACA
GCTATTATCTATTAGCAATACCATAAGTGAAGAAAAAACAGAAACCAAAACCATATTTGAAAGAGGTGTCTCCAACAAGG
GACGAGAGCGAGGCATTGGCCTTGCTAATGTCACAGAAATCTTAGATAACTATATCAATGTAAACTTAGAAACACAGAGT
AACAATTTCTCATTCACACAACAATTAACAATAACTAAAAAGGCCTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(68-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus equinus JB1

38.953

98.286

0.383
  comD/comD1 Streptococcus equinus JB1

38.372

98.286

0.377
  comD/comD3 Streptococcus equinus JB1

38.372

98.286

0.377

Multiple sequence alignment