Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   BBD27_RS06050 Genome accession   NZ_CP016394
Coordinates   1135964..1136695 (-) Length   243 a.a.
NCBI ID   WP_002948869.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ND07     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130964..1141695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD27_RS06035 (BBD27_1180) comB 1133063..1134430 (+) 1368 WP_011681574.1 bacteriocin secretion accessory protein Regulator
  BBD27_RS06040 (BBD27_1181) - 1134445..1134606 (+) 162 WP_011681573.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  BBD27_RS11505 comD/comD2 1134624..1135151 (-) 528 WP_231107203.1 ATP-binding protein Regulator
  BBD27_RS06050 (BBD27_1183) comE/blpR 1135964..1136695 (-) 732 WP_002948869.1 LytR/AlgR family response regulator transcription factor Regulator
  BBD27_RS06055 (BBD27_1184) - 1136951..1137127 (+) 177 WP_011681570.1 Blp family class II bacteriocin -
  BBD27_RS06060 (BBD27_1185) - 1137146..1137346 (+) 201 WP_011681569.1 hypothetical protein -
  BBD27_RS06065 (BBD27_1186) - 1137702..1137932 (+) 231 WP_014608662.1 bacteriocin class II family protein -
  BBD27_RS11870 - 1138937..1139338 (+) 402 WP_024703992.1 hypothetical protein -
  BBD27_RS06080 (BBD27_1189) - 1139589..1139843 (+) 255 WP_014608660.1 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27803.11 Da        Isoelectric Point: 6.9136

>NTDB_id=160008 BBD27_RS06050 WP_002948869.1 1135964..1136695(-) (comE/blpR) [Streptococcus thermophilus strain ND07]
MKIYLLEDNSIQMGRLEEAVAHELKSFGKDLSCVQSFDKPDQLLSAITSNTSDQIFFLDIEIKGEDKKGLDIAKIIRQNN
PYAIIAFVTTHIEFMPQAFGVTAYKYINKTLDEASFRKEIGETIAQVFPINATTTDEFFLYKTESQLINLPMDQILYLST
SDIKHHVHLQTIHTLMDIRANLADFKKIHKKLYPCHRSYIVNTDMIISVNKTNYEATLINGQVLPVSRMKIGKIAQIVEE
RGR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=160008 BBD27_RS06050 WP_002948869.1 1135964..1136695(-) (comE/blpR) [Streptococcus thermophilus strain ND07]
TTGAAGATTTACCTATTAGAAGATAATTCTATTCAGATGGGTCGCTTGGAAGAGGCTGTGGCACATGAACTTAAATCCTT
CGGAAAAGATCTATCTTGTGTCCAGTCTTTTGACAAACCTGACCAGTTGTTATCAGCTATCACTTCTAATACAAGCGATC
AGATTTTCTTTCTTGATATTGAAATTAAAGGTGAAGATAAGAAGGGACTTGATATCGCTAAAATCATACGTCAAAATAAC
CCTTATGCTATCATTGCCTTTGTCACTACACATATAGAGTTCATGCCTCAAGCTTTTGGCGTTACAGCCTATAAATACAT
CAATAAAACCTTAGATGAAGCTAGCTTTAGAAAAGAAATAGGGGAAACCATTGCTCAAGTCTTCCCTATTAACGCAACTA
CCACGGATGAGTTTTTTCTCTACAAAACAGAGTCTCAATTAATAAACCTTCCTATGGATCAAATTCTATACCTATCCACA
TCAGATATCAAACACCATGTTCACCTCCAGACTATCCATACCCTCATGGATATCCGAGCAAATCTGGCAGACTTTAAAAA
GATACACAAAAAGCTCTACCCATGCCATCGGTCCTATATCGTCAATACAGATATGATCATCTCTGTCAACAAGACCAATT
ATGAAGCTACCTTAATTAATGGTCAAGTTCTACCAGTATCCCGTATGAAGATAGGAAAGATTGCACAGATTGTTGAGGAA
AGAGGCAGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(17-119)

LytTr DNA-binding domain (LytTR)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

35.628

100

0.362