Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AR543_RS02785 Genome accession   NZ_CP013023
Coordinates   642824..643318 (-) Length   164 a.a.
NCBI ID   WP_060531654.1    Uniprot ID   A0A172ZBN8
Organism   Paenibacillus bovis strain BD3526     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 637824..648318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR543_RS02765 (AR543_02745) - 638277..638735 (-) 459 WP_060531648.1 CBS domain-containing protein -
  AR543_RS02770 (AR543_02750) - 638883..639905 (-) 1023 WP_060531650.1 LCP family protein -
  AR543_RS02775 (AR543_02755) - 640371..642005 (-) 1635 WP_060531652.1 copper amine oxidase N-terminal domain-containing protein -
  AR543_RS02780 (AR543_02760) rpsR 642527..642802 (-) 276 WP_017815433.1 30S ribosomal protein S18 -
  AR543_RS02785 (AR543_02765) ssbA 642824..643318 (-) 495 WP_060531654.1 single-stranded DNA-binding protein Machinery gene
  AR543_RS02790 (AR543_02770) rpsF 643357..643644 (-) 288 WP_017815435.1 30S ribosomal protein S6 -
  AR543_RS02805 (AR543_02785) - 644769..645296 (+) 528 WP_060531658.1 VTT domain-containing protein -
  AR543_RS02810 (AR543_02790) - 645453..645677 (-) 225 WP_060531661.1 DUF951 domain-containing protein -
  AR543_RS02815 (AR543_02795) - 645996..647018 (-) 1023 WP_060531663.1 mechanosensitive ion channel family protein -
  AR543_RS02820 (AR543_02800) - 647043..647300 (-) 258 WP_060536611.1 DUF3343 domain-containing protein -
  AR543_RS02825 (AR543_02805) - 647605..648105 (-) 501 WP_060531665.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18136.82 Da        Isoelectric Point: 4.7075

>NTDB_id=159323 AR543_RS02785 WP_060531654.1 642824..643318(-) (ssbA) [Paenibacillus bovis strain BD3526]
MLNRVILIGRLTKDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRDGGGNSSGGNREEAPYGGGNSSNTNRSSNGNSYSRDNQDPFSDDGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=159323 AR543_RS02785 WP_060531654.1 642824..643318(-) (ssbA) [Paenibacillus bovis strain BD3526]
TTGTTGAACCGTGTCATTTTGATCGGACGGTTGACCAAAGACCCGGAACTTCGCTACACACCTGCAGGTGTGGCTGTTAC
GCAGTTTACGCTGGCGGTGGATCGTCCTTTTACGAGCCAGGGTGGAGAGCGCGAAGCGGACTTTATTCCGGTCGTAACTT
GGAGACAGCTAGCAGAGACTTGCGCCAACTATTTGCGGAAAGGCCGCTTAACAGCGGTTGAAGGACGTATTCAGGTACGT
AACTATGAGAATAACGAAGGTAAACGTGTCTACGTGACTGAAGTTATTGCTGATAATGTACGCTTCCTGGAGTCCAACCG
TGATGGTGGAGGCAACAGCAGTGGAGGCAATCGTGAGGAAGCACCTTACGGCGGCGGTAACAGTAGCAATACGAACCGCA
GCAGCAATGGAAACAGCTACTCGCGTGACAATCAGGATCCATTTTCCGATGACGGTAAACCGATAGATATATCCGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172ZBN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.322

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

50.877

100

0.53
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

63.415

0.372
  ssb Neisseria gonorrhoeae MS11

33.333

100

0.366

Multiple sequence alignment