Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AOT82_RS08735 Genome accession   NZ_CP012969
Coordinates   2060818..2062404 (+) Length   528 a.a.
NCBI ID   WP_071002687.1    Uniprot ID   -
Organism   Psychrobacter sp. AntiMn-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2055818..2067404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT82_RS08715 (AOT82_1846) - 2056559..2057110 (+) 552 WP_071002684.1 porin family protein -
  AOT82_RS08720 (AOT82_1847) - 2057303..2057899 (+) 597 WP_071002685.1 NfeD family protein -
  AOT82_RS08725 (AOT82_1848) - 2057990..2058871 (+) 882 WP_071002686.1 SPFH domain-containing protein -
  AOT82_RS08730 (AOT82_1849) hemN 2058949..2060520 (-) 1572 WP_156770987.1 oxygen-independent coproporphyrinogen III oxidase -
  AOT82_RS08735 (AOT82_1851) comM 2060818..2062404 (+) 1587 WP_071002687.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AOT82_RS08740 (AOT82_1852) - 2062454..2063137 (-) 684 WP_071002688.1 phosphoglycolate phosphatase -
  AOT82_RS08745 (AOT82_1853) - 2063378..2063869 (-) 492 WP_071002689.1 DUF4385 domain-containing protein -
  AOT82_RS08755 (AOT82_1854) - 2064261..2064683 (-) 423 WP_071002690.1 hypothetical protein -
  AOT82_RS08760 (AOT82_1855) hisB 2065083..2065730 (+) 648 WP_071002691.1 imidazoleglycerol-phosphate dehydratase HisB -
  AOT82_RS08765 (AOT82_1856) hisH 2065875..2066510 (+) 636 WP_071002692.1 imidazole glycerol phosphate synthase subunit HisH -
  AOT82_RS08770 (AOT82_1857) - 2066682..2067059 (+) 378 WP_071002693.1 hypothetical protein -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 56933.71 Da        Isoelectric Point: 7.1534

>NTDB_id=158664 AOT82_RS08735 WP_071002687.1 2060818..2062404(+) (comM) [Psychrobacter sp. AntiMn-1]
MSFAQVYTRSVVGLHAPKVIIEVHLSQGLPALTIVGLPEAAVRESKDRVRSAILNSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASGQLEPEVLSGFEFIGELALNGELRQVTGSLAVARAIKAEGLTSTLSKTLSKASDSVKNEQNVTLQSA
PQLIVPIDNGREASRVDGVTILAAKSLKAVCNHLQSLADPSGSYDCLEVVTPSPAPQHVGYQVDLADVKGQHHARRALEI
AAAGGHSLLFTGPPGSGKTLMASRLPTILPDLSDEDALEVASTYSVADSDYDYGTRPFRQVHHTISAVALVGGGSRPKPG
EITLANKGVLFLDELPEFDRSVLEVLRQPLEAKQITISRANSQMTFPANFQLVAAMNPCPCGYDGDTSGRCRCRPEQIKR
YQDKLSGPLLDRIDLHITVPALPIADLQSAQAGETSKQVRERVAAAHQHQLKRQQKVNNELSPSEIDEYIKLGDSEKQLL
QLAQQRLNLSARGYHRVLRVARTIADLANSTDINSAHVSEALSYRSKE

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=158664 AOT82_RS08735 WP_071002687.1 2060818..2062404(+) (comM) [Psychrobacter sp. AntiMn-1]
ATGTCGTTTGCTCAAGTCTATACTCGCTCAGTTGTCGGTTTGCATGCACCTAAAGTCATCATCGAAGTTCACTTATCGCA
AGGGTTACCAGCACTAACCATCGTTGGTCTACCTGAAGCGGCCGTGCGCGAGAGTAAAGACAGAGTACGCTCTGCCATTC
TTAATTCAGGTTTTCAGTTTCCCAATCGGCGTCTAACGATTAATTTAGCACCTGCTGATTTACCTAAAGATGGCGCGCGT
CTGGACTTGCCAATCGCTATTGGGATATTGGCGGCAAGCGGACAACTTGAGCCAGAAGTATTATCGGGGTTTGAGTTTAT
TGGCGAGTTGGCACTCAACGGTGAGCTGCGGCAGGTGACCGGTAGCTTGGCTGTCGCTCGCGCGATTAAGGCAGAAGGAT
TGACATCAACGTTGTCGAAAACGTTGTCAAAGGCGAGTGACTCTGTAAAAAATGAGCAAAATGTTACCTTACAGAGCGCA
CCACAATTAATCGTACCGATTGACAATGGTCGTGAGGCCAGTCGCGTTGATGGTGTGACGATATTGGCAGCGAAGAGTCT
AAAAGCAGTATGTAACCACTTGCAGTCACTGGCGGATCCAAGCGGATCTTATGACTGCTTGGAGGTGGTCACACCCAGTC
CAGCACCGCAGCATGTAGGCTATCAAGTGGATTTAGCCGATGTCAAAGGACAGCACCATGCCCGCCGCGCGCTAGAGATA
GCAGCAGCTGGCGGTCATTCGTTATTGTTTACAGGGCCACCGGGTTCTGGCAAAACGCTCATGGCCTCACGTTTGCCGAC
GATATTGCCTGATCTCAGTGATGAGGATGCGCTCGAGGTAGCTAGTACGTATTCAGTGGCAGACAGTGATTACGATTACG
GCACACGTCCCTTTAGGCAAGTGCATCACACCATATCAGCCGTGGCGTTGGTTGGCGGCGGTTCACGGCCCAAACCGGGC
GAGATTACGCTTGCCAATAAAGGCGTGTTATTCCTTGATGAATTGCCAGAGTTTGATCGGAGCGTGCTTGAGGTATTGCG
CCAGCCGTTAGAAGCCAAGCAAATCACTATTAGCCGTGCTAACTCGCAAATGACCTTTCCAGCCAACTTTCAACTGGTCG
CTGCTATGAATCCGTGCCCGTGTGGTTATGATGGCGATACCTCAGGGCGCTGCCGCTGTCGACCTGAGCAAATCAAACGC
TATCAAGACAAACTCTCAGGGCCACTATTAGATCGTATTGATTTGCATATTACCGTACCAGCATTGCCGATTGCTGATTT
GCAAAGCGCGCAGGCAGGCGAAACTTCCAAACAAGTACGCGAGCGAGTAGCAGCCGCGCATCAGCATCAATTAAAACGAC
AACAAAAAGTCAATAATGAGCTAAGCCCGAGCGAAATCGATGAATATATCAAATTAGGCGACAGCGAAAAACAACTATTG
CAACTTGCTCAGCAGCGCTTGAATTTATCCGCACGCGGCTACCATCGGGTGTTACGAGTCGCGCGTACTATCGCGGACTT
GGCCAACAGTACAGATATTAATAGCGCCCATGTGTCAGAGGCGCTCAGCTATCGTAGTAAGGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(433-525)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(224-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

48.399

100

0.487
  comM Glaesserella parasuis strain SC1401

48.127

100

0.487
  comM Vibrio campbellii strain DS40M4

47.655

100

0.481
  comM Vibrio cholerae strain A1552

47.556

100

0.479
  comM Legionella pneumophila str. Paris

46.981

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.981

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.026

100

0.424

Multiple sequence alignment