Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   APQ97_RS07250 Genome accession   NZ_CP012911
Coordinates   1466661..1467122 (-) Length   153 a.a.
NCBI ID   WP_002937951.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1461661..1472122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS07195 (APQ97_07185) - 1462434..1462796 (-) 363 WP_002937910.1 hypothetical protein -
  APQ97_RS07200 (APQ97_07190) - 1462875..1463222 (-) 348 WP_002937914.1 HNH endonuclease signature motif containing protein -
  APQ97_RS07205 (APQ97_07195) - 1463319..1463753 (-) 435 WP_002937915.1 DUF1492 domain-containing protein -
  APQ97_RS07210 (APQ97_07200) - 1463830..1464081 (-) 252 WP_002937919.1 hypothetical protein -
  APQ97_RS07215 (APQ97_07205) - 1464093..1464362 (-) 270 WP_002937922.1 hypothetical protein -
  APQ97_RS12555 - 1464362..1464538 (-) 177 WP_002937925.1 hypothetical protein -
  APQ97_RS07220 (APQ97_07210) - 1464538..1464771 (-) 234 WP_002937935.1 hypothetical protein -
  APQ97_RS07225 (APQ97_07215) - 1464787..1465044 (-) 258 WP_230334151.1 DUF1372 family protein -
  APQ97_RS07230 (APQ97_07220) - 1465099..1465617 (-) 519 WP_002937943.1 hypothetical protein -
  APQ97_RS07235 (APQ97_07225) - 1465614..1465946 (-) 333 WP_002937944.1 hypothetical protein -
  APQ97_RS07245 (APQ97_07235) - 1466259..1466633 (-) 375 WP_002937949.1 hypothetical protein -
  APQ97_RS07250 (APQ97_07240) ssb 1466661..1467122 (-) 462 WP_002937951.1 single-stranded DNA-binding protein Machinery gene
  APQ97_RS07255 (APQ97_07245) - 1467225..1467404 (-) 180 WP_002937955.1 hypothetical protein -
  APQ97_RS07260 (APQ97_07250) - 1467394..1467720 (-) 327 WP_002937956.1 hypothetical protein -
  APQ97_RS07265 (APQ97_07255) - 1468096..1469298 (-) 1203 WP_002935596.1 IS110 family transposase -
  APQ97_RS07270 (APQ97_07260) - 1469625..1470652 (-) 1028 Protein_1411 DUF1351 domain-containing protein -
  APQ97_RS07275 (APQ97_07265) bet 1470663..1471433 (-) 771 WP_044769722.1 phage recombination protein Bet -
  APQ97_RS07280 (APQ97_07270) - 1471430..1471609 (-) 180 WP_004195116.1 hypothetical protein -
  APQ97_RS12795 - 1471609..1471737 (-) 129 WP_014636676.1 hypothetical protein -
  APQ97_RS12560 - 1471748..1471891 (-) 144 WP_014636677.1 hypothetical protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17061.73 Da        Isoelectric Point: 5.8552

>NTDB_id=158218 APQ97_RS07250 WP_002937951.1 1466661..1467122(-) (ssb) [Streptococcus suis strain NSUI060]
MINNVVLVGRMTKDAELRYTPSNVAVATFTLAVNRNRKNENGEREADFINCVIWRQAAENLANWAKKGALIGIVGSIQTR
NYENQQGQRVYVTEVIANQFHMLESRGQQSQGNSFQNGNNSNSGNFQNGNNQGYQSPFGNSNPMDISDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=158218 APQ97_RS07250 WP_002937951.1 1466661..1467122(-) (ssb) [Streptococcus suis strain NSUI060]
ATGATTAACAATGTTGTACTGGTTGGAAGAATGACCAAGGACGCTGAACTTAGATACACGCCATCTAATGTAGCGGTAGC
AACGTTCACTCTTGCTGTCAATCGCAACCGTAAAAATGAAAATGGTGAGCGTGAGGCTGATTTTATTAACTGTGTCATTT
GGAGACAGGCAGCCGAAAACTTAGCAAACTGGGCTAAGAAAGGTGCTCTGATCGGGATTGTAGGTAGTATCCAAACTAGG
AACTACGAAAACCAACAGGGTCAGCGTGTCTATGTGACTGAGGTTATTGCTAATCAGTTTCACATGCTAGAAAGCCGTGG
ACAACAGAGCCAGGGCAACTCTTTCCAAAATGGAAACAACTCAAACAGTGGTAATTTCCAAAACGGAAACAACCAAGGTT
ATCAGTCTCCATTTGGTAACTCAAACCCTATGGACATCTCTGATGATGACCTGCCTTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.172

100

0.627
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.327

73.856

0.379
  ssb Vibrio cholerae strain A1552

32.759

100

0.373
  ssb Glaesserella parasuis strain SC1401

30.769

100

0.366

Multiple sequence alignment