Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | APV63_RS00215 | Genome accession | NZ_CP012905 |
| Coordinates | 39401..40537 (+) | Length | 378 a.a. |
| NCBI ID | WP_060472764.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 7C | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34401..45537
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APV63_RS00180 (APV63_00175) | panD | 34855..35208 (+) | 354 | WP_060472759.1 | aspartate 1-decarboxylase | - |
| APV63_RS00185 (APV63_00180) | - | 35211..35504 (+) | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| APV63_RS00190 (APV63_00185) | - | 35504..36499 (+) | 996 | WP_060472760.1 | PDZ domain-containing protein | - |
| APV63_RS00195 (APV63_00190) | comB6 | 36507..37562 (+) | 1056 | WP_060472761.1 | type IV secretion system protein | Machinery gene |
| APV63_RS00200 (APV63_00195) | comB7 | 37578..37691 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| APV63_RS00205 (APV63_00200) | comB8 | 37688..38431 (+) | 744 | WP_060472762.1 | type IV secretion system protein | Machinery gene |
| APV63_RS00210 (APV63_00205) | comB9 | 38431..39408 (+) | 978 | WP_060472763.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| APV63_RS00215 (APV63_00210) | comB10 | 39401..40537 (+) | 1137 | WP_060472764.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| APV63_RS00220 (APV63_00215) | - | 40607..42019 (+) | 1413 | WP_060472765.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| APV63_RS00225 (APV63_00220) | gmd | 42074..43219 (+) | 1146 | WP_060472766.1 | GDP-mannose 4,6-dehydratase | - |
| APV63_RS00230 (APV63_00225) | - | 43212..44144 (+) | 933 | WP_060472767.1 | GDP-L-fucose synthase family protein | - |
| APV63_RS00235 (APV63_00230) | hypE | 44445..45443 (-) | 999 | WP_060472768.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42293.90 Da Isoelectric Point: 9.9225
>NTDB_id=158167 APV63_RS00215 WP_060472764.1 39401..40537(+) (comB10) [Helicobacter pylori strain 7C]
MNKWLKGAIVFVGGFATIITISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKNPPMDLKANTTPLKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFVGGFATIITISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKNPPMDLKANTTPLKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=158167 APV63_RS00215 WP_060472764.1 39401..40537(+) (comB10) [Helicobacter pylori strain 7C]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCCAAAGAAGAAACTTTTAAGAACCCTCCCATGGATTTAAAAGC
AAACACAACCCCCCTAAAAAAAGACTTTTCTTCAAAGCAATGGGATTTATTAGCCGCTCGTATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTCTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTAATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGACATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAGGGGGCGGATATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTATTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCCAAAGAAGAAACTTTTAAGAACCCTCCCATGGATTTAAAAGC
AAACACAACCCCCCTAAAAAAAGACTTTTCTTCAAAGCAATGGGATTTATTAGCCGCTCGTATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTCTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTAATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGACATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAGGGGGCGGATATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTATTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.032 |
100 |
0.96 |