Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | APV63_RS00195 | Genome accession | NZ_CP012905 |
| Coordinates | 36507..37562 (+) | Length | 351 a.a. |
| NCBI ID | WP_060472761.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 7C | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 31507..42562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APV63_RS00165 (APV63_00160) | - | 31937..32350 (+) | 414 | WP_001023008.1 | universal stress protein | - |
| APV63_RS00170 (APV63_00165) | - | 32365..32640 (+) | 276 | WP_000784929.1 | ATP-dependent Clp protease adaptor ClpS | - |
| APV63_RS00175 (APV63_00170) | - | 32640..34865 (+) | 2226 | WP_060472758.1 | AAA family ATPase | - |
| APV63_RS00180 (APV63_00175) | panD | 34855..35208 (+) | 354 | WP_060472759.1 | aspartate 1-decarboxylase | - |
| APV63_RS00185 (APV63_00180) | - | 35211..35504 (+) | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| APV63_RS00190 (APV63_00185) | - | 35504..36499 (+) | 996 | WP_060472760.1 | PDZ domain-containing protein | - |
| APV63_RS00195 (APV63_00190) | comB6 | 36507..37562 (+) | 1056 | WP_060472761.1 | type IV secretion system protein | Machinery gene |
| APV63_RS00200 (APV63_00195) | comB7 | 37578..37691 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| APV63_RS00205 (APV63_00200) | comB8 | 37688..38431 (+) | 744 | WP_060472762.1 | type IV secretion system protein | Machinery gene |
| APV63_RS00210 (APV63_00205) | comB9 | 38431..39408 (+) | 978 | WP_060472763.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| APV63_RS00215 (APV63_00210) | comB10 | 39401..40537 (+) | 1137 | WP_060472764.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| APV63_RS00220 (APV63_00215) | - | 40607..42019 (+) | 1413 | WP_060472765.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39697.66 Da Isoelectric Point: 9.0419
>NTDB_id=158163 APV63_RS00195 WP_060472761.1 36507..37562(+) (comB6) [Helicobacter pylori strain 7C]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIVPNMITQSLSQSLSSFSNHALSLDFIFNHGFYALSFISDLSHNEISVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIVPNMITQSLSQSLSSFSNHALSLDFIFNHGFYALSFISDLSHNEISVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=158163 APV63_RS00195 WP_060472761.1 36507..37562(+) (comB6) [Helicobacter pylori strain 7C]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAGGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATTGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGTGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAGCTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTCTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATATCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTATAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCACTAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAGGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATTGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGTGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAGCTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTCTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATATCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTATAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCACTAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
94.587 |
100 |
0.946 |