Detailed information NTG0158166

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: APV63_RS00210
• Genome accession: NZ_CP012905
• Coordinates: 38431..39408 (+)
• Length: 325 a.a.
• NCBI ID: WP_060472763.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 7C
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33431..44408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APV63_RS00180 (APV63_00175)	panD	34855..35208 (+)	354	WP_060472759.1	aspartate 1-decarboxylase	-
APV63_RS00185 (APV63_00180)	-	35211..35504 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
APV63_RS00190 (APV63_00185)	-	35504..36499 (+)	996	WP_060472760.1	PDZ domain-containing protein	-
APV63_RS00195 (APV63_00190)	comB6	36507..37562 (+)	1056	WP_060472761.1	type IV secretion system protein	Machinery gene
APV63_RS00200 (APV63_00195)	comB7	37578..37691 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
APV63_RS00205 (APV63_00200)	comB8	37688..38431 (+)	744	WP_060472762.1	type IV secretion system protein	Machinery gene
APV63_RS00210 (APV63_00205)	comB9	38431..39408 (+)	978	WP_060472763.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
APV63_RS00215 (APV63_00210)	comB10	39401..40537 (+)	1137	WP_060472764.1	DNA type IV secretion system protein ComB10	Machinery gene
APV63_RS00220 (APV63_00215)	-	40607..42019 (+)	1413	WP_060472765.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
APV63_RS00225 (APV63_00220)	gmd	42074..43219 (+)	1146	WP_060472766.1	GDP-mannose 4,6-dehydratase	-
APV63_RS00230 (APV63_00225)	-	43212..44144 (+)	933	WP_060472767.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37428.14 Da
• Isoelectric Point: 9.3370

>NTDB_id=158166 APV63_RS00210 WP_060472763.1 38431..39408(+) (comB9) [Helicobacter pylori strain 7C]
MRKVLYALMGFLLVFSVLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENMAENAPKDAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIK
KGKDE

Nucleotide

• Length: 978 bp

>NTDB_id=158166 APV63_RS00210 WP_060472763.1 38431..39408(+) (comB9) [Helicobacter pylori strain 7C]
ATGCGTAAGGTTTTATATGCCCTCATGGGTTTTTTGTTGGTTTTTAGCGTTTTAAAAGCCGATGATTTTTTGGAAGAAGC
GAACGAAACAGCCCCGGCGAATCTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCACAAACAACAA
GCCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAG
ATTAGCGCTCTCTAAATTCCCCGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTATCAAA
AAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.706	100	0.96